Variant report

Variant	rs1784411
Chromosome Location	chr11:102452850-102452851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1320659	0.84[EUR][1000 genomes]
rs1624909	0.86[EUR][1000 genomes]
rs1630876	0.86[EUR][1000 genomes]
rs1631143	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711402	1.00[CHB][hapmap]
rs1711405	0.87[EUR][1000 genomes]
rs1711406	0.87[EUR][1000 genomes]
rs1711407	0.87[EUR][1000 genomes]
rs1711419	0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1711424	0.94[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1711428	1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1711433	1.00[CHB][hapmap]
rs1784401	0.87[EUR][1000 genomes]
rs1784402	0.87[EUR][1000 genomes]
rs1784404	0.86[EUR][1000 genomes]
rs1784414	0.87[EUR][1000 genomes]
rs1784416	0.85[JPT][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs1784443	1.00[CHB][hapmap]
rs1940046	0.83[EUR][1000 genomes]
rs1940047	0.84[EUR][1000 genomes]
rs1940049	0.84[EUR][1000 genomes]
rs1940050	0.84[EUR][1000 genomes]
rs2009487	0.84[EUR][1000 genomes]
rs2009489	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs2009659	0.84[EUR][1000 genomes]
rs2245697	0.86[EUR][1000 genomes]
rs2245897	0.84[CEU][hapmap];0.83[MEX][hapmap];0.84[EUR][1000 genomes]
rs2459474	0.84[EUR][1000 genomes]
rs2459476	0.86[EUR][1000 genomes]
rs2459477	0.85[EUR][1000 genomes]
rs2464354	0.86[EUR][1000 genomes]
rs2464355	0.86[EUR][1000 genomes]
rs2464356	0.84[EUR][1000 genomes]
rs2464357	0.84[EUR][1000 genomes]
rs2464358	0.84[EUR][1000 genomes]
rs2464359	0.84[EUR][1000 genomes]
rs2464360	0.84[EUR][1000 genomes]
rs2509022	0.86[EUR][1000 genomes]
rs2509023	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs2509024	0.84[CEU][hapmap];0.84[MEX][hapmap];0.84[EUR][1000 genomes]
rs2701965	0.84[EUR][1000 genomes]
rs2701966	0.84[EUR][1000 genomes]
rs2701967	0.84[EUR][1000 genomes]
rs2701968	0.84[CEU][hapmap];0.84[MEX][hapmap];0.84[EUR][1000 genomes]
rs2701969	0.84[EUR][1000 genomes]
rs2701971	0.84[EUR][1000 genomes]
rs2701973	0.84[EUR][1000 genomes]
rs2701974	0.84[EUR][1000 genomes]
rs2701975	0.83[EUR][1000 genomes]
rs2846344	0.83[EUR][1000 genomes]
rs2846345	0.83[EUR][1000 genomes]
rs2846346	0.84[EUR][1000 genomes]
rs2846347	0.84[EUR][1000 genomes]
rs7116246	0.86[EUR][1000 genomes]
rs7116339	1.00[JPT][hapmap]
rs7939183	1.00[JPT][hapmap]
rs7939224	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102447600-102453000	Weak transcription	HUVEC	blood vessel
2	chr11:102448800-102453000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:102449000-102453200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:102449200-102453000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr11:102449200-102453000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr11:102450600-102453400	Enhancers	GM12878-XiMat	blood
7	chr11:102451200-102453600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:102451400-102453800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:102451400-102462600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:102451600-102454200	Weak transcription	HMEC	breast
11	chr11:102451600-102463600	Weak transcription	NHDF-Ad	bronchial

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