Variant report

Variant	rs1711424
Chromosome Location	chr11:102478270-102478271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1320659	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1624909	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1630876	0.91[EUR][1000 genomes]
rs1631143	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1711405	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1711406	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1711407	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1711419	1.00[CHB][hapmap];0.85[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711428	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784401	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1784402	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1784404	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1784411	0.94[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1784414	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1784416	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1940046	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1940047	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1940049	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1940050	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2009487	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2009489	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2009659	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2245697	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2245803	0.88[MKK][hapmap]
rs2245897	0.89[CEU][hapmap];0.97[GIH][hapmap];0.88[MEX][hapmap];0.83[MKK][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2459474	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2459476	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2459477	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2464353	0.84[EUR][1000 genomes]
rs2464354	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2464355	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2464356	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2464357	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2464358	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2464359	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2464360	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2509022	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2509023	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2509024	0.89[CEU][hapmap];0.97[GIH][hapmap];0.88[MEX][hapmap];0.83[MKK][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2701965	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2701966	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2701967	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2701968	0.89[CEU][hapmap];0.97[GIH][hapmap];0.88[MEX][hapmap];0.83[MKK][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2701969	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2701971	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2701972	0.82[EUR][1000 genomes]
rs2701973	0.89[EUR][1000 genomes]
rs2701974	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2701975	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2846344	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2846345	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2846346	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2846347	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7116246	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7116339	1.00[JPT][hapmap]
rs7939183	1.00[JPT][hapmap]
rs7939224	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv1792869	chr11:102477138-102483249	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv33374	chr11:102477417-102479840	Weak transcription Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102474600-102486400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:102475200-102486200	Weak transcription	HSMMtube	muscle
3	chr11:102475400-102483600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:102475800-102478800	Weak transcription	A549	lung
5	chr11:102475800-102484200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:102476000-102478400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:102476000-102479400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:102476000-102484600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:102476000-102486400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:102476200-102479400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:102476200-102484000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:102476200-102484000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr11:102476600-102486400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:102478000-102478400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:102478000-102480600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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