Variant report

Variant	rs17115047
Chromosome Location	chr1:85225610-85225611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85214466..85216211-chr1:85223596..85226485,2	K562	blood:
2	chr1:85220217..85223143-chr1:85225006..85227154,2	K562	blood:

rs_ID	r²[population]
rs11805789	1.00[ASN][1000 genomes]
rs17115051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17117109	1.00[MEX][hapmap]
rs17377156	1.00[ASN][1000 genomes]
rs2025597	1.00[MEX][hapmap]
rs3768249	1.00[JPT][hapmap]
rs586403	1.00[MEX][hapmap]
rs6665333	1.00[TSI][hapmap]

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85204200-85230400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:85216800-85230000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:85218200-85226800	Enhancers	Fetal Brain Male	brain
4	chr1:85223600-85228000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:85224200-85229400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:85224200-85229400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:85224400-85225800	Enhancers	Stomach Mucosa	stomach
8	chr1:85224600-85225800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr1:85224600-85225800	Enhancers	Fetal Heart	heart
10	chr1:85225000-85229600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:85225200-85225800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:85225200-85225800	Enhancers	Left Ventricle	heart
13	chr1:85225200-85229800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:85225400-85225800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr1:85225400-85225800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:85225400-85225800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:85225400-85225800	Enhancers	Brain Anterior Caudate	brain
18	chr1:85225400-85225800	Enhancers	Brain Cingulate Gyrus	brain
19	chr1:85225400-85225800	Flanking Active TSS	Fetal Brain Female	brain
20	chr1:85225400-85225800	Enhancers	Ovary	ovary
21	chr1:85225400-85226000	Enhancers	Brain Hippocampus Middle	brain
22	chr1:85225400-85226000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr1:85225400-85226200	Enhancers	Brain Germinal Matrix	brain
24	chr1:85225400-85226200	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr1:85225400-85229600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr1:85225400-85229600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr1:85225400-85229600	Weak transcription	HMEC	breast
28	chr1:85225600-85225800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr1:85225600-85225800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:85225600-85225800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr1:85225600-85225800	Enhancers	Brain Angular Gyrus	brain
32	chr1:85225600-85225800	Enhancers	Brain Substantia Nigra	brain
33	chr1:85225600-85225800	Enhancers	Right Atrium	heart
34	chr1:85225600-85226000	Enhancers	Brain Inferior Temporal Lobe	brain

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