Variant report

Variant	rs17116762
Chromosome Location	chr5:154433155-154433156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12332387	0.84[EUR][1000 genomes]
rs17116707	1.00[YRI][hapmap]
rs17116724	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6580132	0.91[EUR][1000 genomes]
rs6859994	1.00[JPT][hapmap]
rs6862664	0.84[EUR][1000 genomes]
rs6863825	0.84[EUR][1000 genomes]
rs6865458	0.91[EUR][1000 genomes]
rs6875932	0.93[EUR][1000 genomes]
rs716664	0.86[AFR][1000 genomes]
rs7718551	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7736564	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9324799	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023588	chr5:154415586-154464455	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154430000-154433200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:154432000-154434200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr5:154432000-154435000	Enhancers	HepG2	liver
4	chr5:154432200-154433400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr5:154432200-154433600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:154432200-154434000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:154432200-154434200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:154432200-154435600	Enhancers	Fetal Heart	heart
9	chr5:154432400-154433200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:154432400-154433200	Weak transcription	Right Ventricle	heart
11	chr5:154432400-154433600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr5:154432400-154434200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:154432400-154437200	Weak transcription	Left Ventricle	heart
14	chr5:154432600-154433400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr5:154432600-154433400	Enhancers	Right Atrium	heart
16	chr5:154432600-154434200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:154432800-154433400	Enhancers	H9 Cell Line	embryonic stem cell
18	chr5:154432800-154433400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr5:154432800-154433800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:154433000-154433600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:154433000-154434000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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