Variant report
| Variant | rs17116707 |
|---|---|
| Chromosome Location | chr5:154389411-154389412 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:154388177..154391057-chr5:154394147..154395904,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| KIF4B | TF binding region |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10515727 | 1.00[JPT][hapmap] |
| rs12153231 | 0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12187934 | 0.86[AFR][1000 genomes] |
| rs1421814 | 1.00[JPT][hapmap] |
| rs1421815 | 1.00[JPT][hapmap] |
| rs1421819 | 1.00[JPT][hapmap] |
| rs17096232 | 1.00[JPT][hapmap] |
| rs17116455 | 1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs17116489 | 1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs17116638 | 1.00[JPT][hapmap] |
| rs1995034 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2047305 | 1.00[JPT][hapmap] |
| rs2291780 | 1.00[JPT][hapmap] |
| rs3776984 | 1.00[JPT][hapmap] |
| rs6859994 | 0.89[CEU][hapmap] |
| rs6895741 | 1.00[JPT][hapmap] |
| rs7709867 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7718551 | 0.88[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs7734569 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7736342 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7736564 | 0.89[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs9324797 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9324799 | 0.88[CEU][hapmap];0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv883058 | chr5:154375465-154432580 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:154389000-154390600 | Enhancers | Fetal Heart | heart |
