Variant report

Variant	rs2291780
Chromosome Location	chr5:154336553-154336554
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154315200..154317795-chr5:154335501..154337336,2	K562	blood:
2	chr5:154335910..154338259-chr5:154338670..154340658,2	K562	blood:

Variant related genes	Relation type
ENSG00000082516	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10515727	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12186480	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187572	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12187890	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187921	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12187934	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12187974	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188149	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12188906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12189508	0.90[EUR][1000 genomes]
rs1421813	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421819	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs14922	0.83[ASN][1000 genomes]
rs17096232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116433	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17116455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116534	1.00[CHB][hapmap]
rs17116638	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116669	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17116707	1.00[JPT][hapmap]
rs2047305	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2112223	1.00[CHB][hapmap]
rs2544859	0.82[CHB][hapmap]
rs2644744	1.00[CHB][hapmap]
rs2688198	1.00[CHB][hapmap]
rs2688208	1.00[CHB][hapmap]
rs28372688	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3776984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55692274	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56773390	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56895891	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61145644	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6580123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6865950	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6871813	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6895588	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6895702	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6895741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73806917	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73807206	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73807207	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73807213	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73807216	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73809507	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709899	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7716019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs816718	1.00[CHB][hapmap]
rs888694	0.81[AMR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154321200-154337400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:154321200-154338000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:154321400-154338000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr5:154321400-154338200	Weak transcription	Lung	lung
5	chr5:154321400-154338600	Weak transcription	Gastric	stomach
6	chr5:154321400-154338800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:154321400-154339000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:154321400-154346000	Weak transcription	Colonic Mucosa	Colon
9	chr5:154321600-154336600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:154321600-154337400	Weak transcription	Fetal Intestine Small	intestine
11	chr5:154321600-154337400	Weak transcription	Ovary	ovary
12	chr5:154321600-154338000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:154321600-154338200	Weak transcription	Aorta	Aorta
14	chr5:154321600-154338800	Weak transcription	Fetal Kidney	kidney
15	chr5:154321600-154340000	Weak transcription	HSMMtube	muscle
16	chr5:154321600-154343400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr5:154321600-154345600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr5:154321800-154338600	Weak transcription	Fetal Muscle Leg	muscle
19	chr5:154321800-154352200	Weak transcription	Right Ventricle	heart
20	chr5:154322000-154350000	Weak transcription	Fetal Brain Male	brain
21	chr5:154322200-154336600	Weak transcription	Osteobl	bone
22	chr5:154322200-154338800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr5:154322400-154336600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr5:154322400-154337800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr5:154322400-154338400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr5:154322400-154338600	Weak transcription	NHLF	lung
27	chr5:154322400-154338800	Weak transcription	HMEC	breast
28	chr5:154322400-154338800	Weak transcription	NHDF-Ad	bronchial
29	chr5:154322400-154339000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr5:154322400-154349600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr5:154322600-154336600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr5:154322600-154337800	Weak transcription	Fetal Lung	lung
33	chr5:154322600-154364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr5:154322800-154346000	Weak transcription	Colon Smooth Muscle	Colon
35	chr5:154323000-154336800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr5:154323000-154337600	Weak transcription	Thymus	Thymus
37	chr5:154323000-154337800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr5:154323000-154338200	Weak transcription	Pancreas	Pancrea
39	chr5:154324800-154338600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr5:154325000-154338200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr5:154325000-154338600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr5:154325200-154338600	Weak transcription	Fetal Brain Female	brain
43	chr5:154325400-154336600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr5:154325400-154337400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr5:154325400-154340800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr5:154325800-154337200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr5:154325800-154338600	Weak transcription	NHEK	skin
48	chr5:154326000-154336600	Weak transcription	Brain Germinal Matrix	brain
49	chr5:154326000-154338800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr5:154327400-154336600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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