Variant report

Variant	rs55692274
Chromosome Location	chr5:154328031-154328032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154134694..154137544-chr5:154327268..154329169,2	K562	blood:
2	chr5:154319390..154322040-chr5:154325591..154328629,4	MCF-7	breast:
3	chr5:154322602..154324866-chr5:154325761..154328339,2	K562	blood:

Variant related genes	Relation type
ENSG00000155506	Chromatin interaction
ENSG00000082515	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10515727	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12186480	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187572	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12187890	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187921	0.90[EUR][1000 genomes]
rs12187934	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12187974	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188149	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188498	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12188906	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12189508	0.90[EUR][1000 genomes]
rs1421813	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421814	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421815	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421819	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs14922	0.83[ASN][1000 genomes]
rs17096232	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116417	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116433	0.84[EUR][1000 genomes]
rs17116455	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116489	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116638	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116669	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2291780	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28372688	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3776984	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56773390	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56895891	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61145644	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6580123	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6865950	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6871813	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6895588	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6895702	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73806917	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73807206	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73807207	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73807213	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73807216	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73809507	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709899	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7716019	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154321200-154337400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:154321200-154338000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:154321400-154329600	Weak transcription	Small Intestine	intestine
4	chr5:154321400-154336400	Weak transcription	Placenta	Placenta
5	chr5:154321400-154338000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr5:154321400-154338200	Weak transcription	Lung	lung
7	chr5:154321400-154338600	Weak transcription	Gastric	stomach
8	chr5:154321400-154338800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:154321400-154339000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:154321400-154346000	Weak transcription	Colonic Mucosa	Colon
11	chr5:154321600-154336000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr5:154321600-154336600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:154321600-154337400	Weak transcription	Fetal Intestine Small	intestine
14	chr5:154321600-154337400	Weak transcription	Ovary	ovary
15	chr5:154321600-154338000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:154321600-154338200	Weak transcription	Aorta	Aorta
17	chr5:154321600-154338800	Weak transcription	Fetal Kidney	kidney
18	chr5:154321600-154340000	Weak transcription	HSMMtube	muscle
19	chr5:154321600-154343400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr5:154321600-154345600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr5:154321800-154336200	Weak transcription	NH-A	brain
22	chr5:154321800-154336400	Weak transcription	Fetal Thymus	thymus
23	chr5:154321800-154338600	Weak transcription	Fetal Muscle Leg	muscle
24	chr5:154321800-154352200	Weak transcription	Right Ventricle	heart
25	chr5:154322000-154330400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr5:154322000-154330400	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr5:154322000-154350000	Weak transcription	Fetal Brain Male	brain
28	chr5:154322200-154329400	Weak transcription	Psoas Muscle	Psoas
29	chr5:154322200-154336600	Weak transcription	Osteobl	bone
30	chr5:154322200-154338800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:154322400-154330200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr5:154322400-154335200	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr5:154322400-154335800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr5:154322400-154336200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr5:154322400-154336200	Weak transcription	Fetal Intestine Large	intestine
36	chr5:154322400-154336400	Weak transcription	HSMM	muscle
37	chr5:154322400-154336600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr5:154322400-154337800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr5:154322400-154338400	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr5:154322400-154338600	Weak transcription	NHLF	lung
41	chr5:154322400-154338800	Weak transcription	HMEC	breast
42	chr5:154322400-154338800	Weak transcription	NHDF-Ad	bronchial
43	chr5:154322400-154339000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr5:154322400-154349600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr5:154322600-154335800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr5:154322600-154336600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr5:154322600-154337800	Weak transcription	Fetal Lung	lung
48	chr5:154322600-154364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr5:154322800-154328800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr5:154322800-154329400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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