Variant report

Variant	rs6895588
Chromosome Location	chr5:154356186-154356187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154353720..154356522-chr5:154358959..154360487,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1035368	1.00[TSI][hapmap]
rs10515727	1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12186480	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12187572	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12187890	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12187921	0.94[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs12187934	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187974	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12188149	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12188498	1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes]
rs12188906	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12189508	0.86[EUR][1000 genomes]
rs12300	0.90[TSI][hapmap]
rs1421813	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1421814	1.00[JPT][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1421815	1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1421819	1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs14922	0.87[ASN][1000 genomes]
rs17096232	0.87[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17116417	0.82[ASN][1000 genomes]
rs17116442	1.00[TSI][hapmap]
rs17116455	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17116489	1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17116534	0.83[MEX][hapmap];1.00[TSI][hapmap]
rs17116638	1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17116669	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116707	1.00[JPT][hapmap]
rs186971	0.81[AMR][1000 genomes]
rs1974776	1.00[TSI][hapmap]
rs1974777	1.00[TSI][hapmap]
rs2047305	1.00[JPT][hapmap]
rs2258437	1.00[TSI][hapmap]
rs2291780	1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2544859	1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs2544880	1.00[TSI][hapmap]
rs2544884	1.00[TSI][hapmap]
rs2644743	1.00[TSI][hapmap]
rs2644744	1.00[TSI][hapmap]
rs2688198	0.83[MEX][hapmap];1.00[TSI][hapmap]
rs2688201	1.00[TSI][hapmap]
rs28372688	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs348739	1.00[TSI][hapmap]
rs348750	1.00[TSI][hapmap]
rs348752	1.00[TSI][hapmap]
rs3776984	1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs39614	1.00[TSI][hapmap]
rs55692274	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56773390	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56895891	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61145644	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580123	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6865950	0.87[CHD][hapmap];0.94[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6871813	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6895702	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6895741	1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs702742	1.00[TSI][hapmap]
rs73806917	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73807206	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73807207	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73807213	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73807216	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73809507	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7709899	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7716019	0.82[ASN][1000 genomes]
rs816717	1.00[TSI][hapmap]
rs816718	0.95[TSI][hapmap]
rs816720	1.00[TSI][hapmap]
rs888694	0.81[AMR][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154322600-154364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:154339200-154361200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:154339600-154356200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:154340200-154357200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr5:154341400-154366600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:154342800-154363400	Weak transcription	Brain Germinal Matrix	brain
7	chr5:154343400-154356800	Weak transcription	Hela-S3	cervix
8	chr5:154344800-154356400	Weak transcription	HMEC	breast
9	chr5:154345000-154357000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr5:154346000-154356800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr5:154346400-154357200	Weak transcription	Aorta	Aorta
12	chr5:154346800-154357000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr5:154348400-154356800	Weak transcription	Left Ventricle	heart
14	chr5:154348400-154357400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:154348600-154360200	Weak transcription	Fetal Brain Female	brain
16	chr5:154348800-154356600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr5:154348800-154356600	Weak transcription	Brain Anterior Caudate	brain
18	chr5:154348800-154357000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:154348800-154357000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr5:154348800-154357400	Weak transcription	Primary T cells from cord blood	blood
21	chr5:154348800-154357400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:154349000-154356200	Weak transcription	HSMM	muscle
23	chr5:154349000-154357000	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr5:154349200-154357000	Weak transcription	K562	blood
25	chr5:154349400-154357000	Weak transcription	Fetal Muscle Leg	muscle
26	chr5:154349600-154357200	Weak transcription	A549	lung
27	chr5:154350600-154357000	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr5:154350600-154357400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr5:154350800-154357200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr5:154350800-154358600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr5:154354800-154356200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr5:154355600-154361200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr5:154355800-154357600	Weak transcription	Brain Inferior Temporal Lobe	brain

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