Variant report

Variant	rs61145644
Chromosome Location	chr5:154351800-154351801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154346229..154348677-chr5:154350514..154352609,2	K562	blood:
2	chr5:154350796..154352485-chr5:154407366..154409300,2	MCF-7	breast:
3	chr5:154351777..154353155-chr5:154407250..154408188,7	MCF-7	breast:
4	chr5:154350792..154353611-chr5:154357182..154359938,2	K562	blood:
5	chr5:154351776..154352497-chr5:154383598..154384136,2	MCF-7	breast:
6	chr5:154345809..154348149-chr5:154351585..154354397,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10515727	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12186480	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12187572	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12187890	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12187921	0.86[EUR][1000 genomes]
rs12187934	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187974	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12188149	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12188498	0.82[ASN][1000 genomes]
rs12188906	0.82[ASN][1000 genomes]
rs12189508	0.86[EUR][1000 genomes]
rs1421813	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1421814	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1421815	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1421819	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs14922	0.87[ASN][1000 genomes]
rs17096232	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17116417	0.82[ASN][1000 genomes]
rs17116455	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17116489	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17116638	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17116669	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186971	0.83[AMR][1000 genomes]
rs2112223	0.82[AMR][1000 genomes]
rs2291780	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2544859	0.83[AMR][1000 genomes]
rs2644744	0.82[AMR][1000 genomes]
rs28372688	0.96[ASN][1000 genomes]
rs3776984	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55692274	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55770418	0.82[AMR][1000 genomes]
rs56773390	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56895891	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6580123	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6865950	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6871813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6895588	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6895702	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73806917	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73807206	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73807207	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73807213	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73807216	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73809507	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7709899	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7716019	0.82[ASN][1000 genomes]
rs888694	0.83[AMR][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154321800-154352200	Weak transcription	Right Ventricle	heart
2	chr5:154322600-154364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:154338400-154351800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:154339200-154355400	Weak transcription	Gastric	stomach
5	chr5:154339200-154361200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:154339400-154355400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:154339400-154355400	Weak transcription	Pancreas	Pancrea
8	chr5:154339400-154355600	Weak transcription	Lung	lung
9	chr5:154339600-154356200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:154340200-154357200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr5:154341400-154366600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:154342800-154363400	Weak transcription	Brain Germinal Matrix	brain
13	chr5:154343400-154356800	Weak transcription	Hela-S3	cervix
14	chr5:154344800-154356400	Weak transcription	HMEC	breast
15	chr5:154345000-154357000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr5:154346000-154356800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr5:154346200-154352000	Weak transcription	NHLF	lung
18	chr5:154346400-154355400	Weak transcription	Fetal Stomach	stomach
19	chr5:154346400-154357200	Weak transcription	Aorta	Aorta
20	chr5:154346800-154352000	Weak transcription	Colonic Mucosa	Colon
21	chr5:154346800-154355000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr5:154346800-154357000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr5:154347600-154354400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr5:154348000-154352000	Weak transcription	Dnd41	blood
25	chr5:154348000-154353800	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr5:154348200-154352400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr5:154348400-154354800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr5:154348400-154356800	Weak transcription	Left Ventricle	heart
29	chr5:154348400-154357400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr5:154348600-154355400	Weak transcription	Primary B cells from peripheral blood	blood
31	chr5:154348600-154355600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr5:154348600-154355800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr5:154348600-154360200	Weak transcription	Fetal Brain Female	brain
34	chr5:154348800-154352000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr5:154348800-154352000	Weak transcription	Fetal Muscle Trunk	muscle
36	chr5:154348800-154352400	Weak transcription	Placenta	Placenta
37	chr5:154348800-154353000	Weak transcription	Fetal Thymus	thymus
38	chr5:154348800-154353200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr5:154348800-154353600	Weak transcription	Psoas Muscle	Psoas
40	chr5:154348800-154355400	Weak transcription	Thymus	Thymus
41	chr5:154348800-154355600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr5:154348800-154356600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr5:154348800-154356600	Weak transcription	Brain Anterior Caudate	brain
44	chr5:154348800-154357000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr5:154348800-154357000	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr5:154348800-154357400	Weak transcription	Primary T cells from cord blood	blood
47	chr5:154348800-154357400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr5:154349000-154351800	Weak transcription	Stomach Smooth Muscle	stomach
49	chr5:154349000-154352200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr5:154349000-154352200	Weak transcription	Ovary	ovary

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