Variant report

Variant	rs56895891
Chromosome Location	chr5:154295612-154295613
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154235613..154237923-chr5:154295096..154296729,2	MCF-7	breast:
2	chr5:154291518..154293483-chr5:154293828..154295941,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155508	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10515727	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12186480	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187572	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12187890	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187921	0.86[EUR][1000 genomes]
rs12187934	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12187974	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188149	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188498	0.86[ASN][1000 genomes]
rs12188906	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12189508	0.86[EUR][1000 genomes]
rs1421813	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421814	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421815	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421819	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs14922	0.83[ASN][1000 genomes]
rs17096232	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116417	0.86[ASN][1000 genomes]
rs17116433	0.80[EUR][1000 genomes]
rs17116455	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116489	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116638	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116669	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2291780	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28372688	1.00[ASN][1000 genomes]
rs3776984	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55692274	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56773390	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61145644	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6580123	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6865950	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6871813	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6895588	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6895702	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73806917	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73807206	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73807207	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73807213	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73807216	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73809507	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709899	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7716019	0.86[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154262800-154300800	Strong transcription	Fetal Brain Female	brain
2	chr5:154264000-154312800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:154266200-154312200	Strong transcription	Fetal Thymus	thymus
4	chr5:154266200-154316600	Weak transcription	Stomach Mucosa	stomach
5	chr5:154266400-154311200	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr5:154266400-154312800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:154266400-154315600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:154266600-154312800	Strong transcription	Fetal Intestine Large	intestine
9	chr5:154266600-154313200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr5:154266600-154313600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:154267000-154304400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:154267000-154312800	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr5:154267200-154311800	Strong transcription	Primary B cells from peripheral blood	blood
14	chr5:154267200-154312800	Strong transcription	H1 Cell Line	embryonic stem cell
15	chr5:154267400-154299000	Strong transcription	Fetal Stomach	stomach
16	chr5:154267600-154300000	Strong transcription	Fetal Muscle Leg	muscle
17	chr5:154267600-154301600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr5:154267600-154313200	Strong transcription	Duodenum Mucosa	Duodenum
19	chr5:154267800-154315600	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr5:154268000-154296600	Weak transcription	Right Atrium	heart
21	chr5:154268000-154315600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:154268200-154300200	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr5:154268200-154315000	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr5:154268200-154315600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr5:154268200-154316200	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr5:154268800-154312800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr5:154269800-154313600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr5:154269800-154315400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr5:154269800-154316200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr5:154273600-154316600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr5:154275000-154300800	Strong transcription	Primary B cells from cord blood	blood
32	chr5:154275400-154313400	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr5:154276200-154314600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr5:154279000-154304400	Strong transcription	Fetal Muscle Trunk	muscle
35	chr5:154279400-154312200	Strong transcription	Liver	Liver
36	chr5:154280200-154299600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr5:154280200-154311400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr5:154283200-154316600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr5:154283600-154301600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr5:154283800-154299000	Strong transcription	Lung	lung
41	chr5:154284400-154296000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr5:154284600-154297800	Strong transcription	Fetal Lung	lung
43	chr5:154284600-154305400	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr5:154286000-154304000	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr5:154286000-154312000	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr5:154288200-154299800	Strong transcription	Brain Germinal Matrix	brain
47	chr5:154290000-154301000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr5:154290200-154296000	Weak transcription	Fetal Kidney	kidney
49	chr5:154290400-154296600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr5:154290600-154299800	Strong transcription	GM12878-XiMat	blood

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