Variant report

Variant	rs73807216
Chromosome Location	chr5:154348533-154348534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154236951..154238944-chr5:154345833..154349110,3	MCF-7	breast:
2	chr5:154347106..154348977-chr5:154351843..154353596,2	MCF-7	breast:
3	chr5:154342000..154345250-chr5:154346858..154348980,3	MCF-7	breast:
4	chr5:154346229..154348677-chr5:154350514..154352609,2	K562	blood:
5	chr5:154328825..154331807-chr5:154348446..154350262,2	K562	blood:

Variant related genes	Relation type
ENSG00000170271	Chromatin interaction
ENSG00000155508	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10515727	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12186480	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12187572	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12187890	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12187921	0.86[EUR][1000 genomes]
rs12187934	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187974	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12188149	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12188498	0.82[ASN][1000 genomes]
rs12188906	0.82[ASN][1000 genomes]
rs12189508	0.86[EUR][1000 genomes]
rs1421813	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1421814	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1421815	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1421819	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs14922	0.87[ASN][1000 genomes]
rs17096232	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17116417	0.82[ASN][1000 genomes]
rs17116455	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17116489	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17116638	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17116669	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2291780	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28372688	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3776984	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55692274	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56773390	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56895891	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61145644	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580123	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6865950	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6871813	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6895588	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6895702	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73806917	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73807206	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73807207	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73807213	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73809507	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7709899	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7716019	0.82[ASN][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154321800-154352200	Weak transcription	Right Ventricle	heart
2	chr5:154322000-154350000	Weak transcription	Fetal Brain Male	brain
3	chr5:154322400-154349600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:154322600-154364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:154327600-154351600	Weak transcription	Fetal Heart	heart
6	chr5:154335600-154350600	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr5:154335800-154349000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:154336000-154349000	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr5:154336000-154349400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:154336200-154348800	Strong transcription	Fetal Intestine Large	intestine
11	chr5:154336200-154349000	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr5:154336200-154349400	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr5:154336600-154348800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:154336800-154350600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:154338400-154351800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:154339200-154350400	Weak transcription	Esophagus	oesophagus
17	chr5:154339200-154355400	Weak transcription	Gastric	stomach
18	chr5:154339200-154361200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr5:154339400-154350400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:154339400-154355400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:154339400-154355400	Weak transcription	Pancreas	Pancrea
22	chr5:154339400-154355600	Weak transcription	Lung	lung
23	chr5:154339600-154349800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr5:154339600-154356200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:154340200-154357200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr5:154341400-154366600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr5:154341600-154349600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr5:154342400-154349400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr5:154342800-154363400	Weak transcription	Brain Germinal Matrix	brain
30	chr5:154343000-154348800	Strong transcription	Primary T cells from cord blood	blood
31	chr5:154343400-154356800	Weak transcription	Hela-S3	cervix
32	chr5:154343600-154349400	Strong transcription	Fetal Muscle Leg	muscle
33	chr5:154344200-154348800	Strong transcription	Fetal Lung	lung
34	chr5:154344800-154356400	Weak transcription	HMEC	breast
35	chr5:154345000-154348800	Strong transcription	Fetal Muscle Trunk	muscle
36	chr5:154345000-154357000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr5:154345200-154348800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr5:154345200-154348800	Strong transcription	Fetal Thymus	thymus
39	chr5:154345200-154349000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr5:154345400-154348600	Strong transcription	Primary B cells from peripheral blood	blood
41	chr5:154345400-154349000	Strong transcription	Primary B cells from cord blood	blood
42	chr5:154345400-154349200	Strong transcription	Primary hematopoietic stem cells	blood
43	chr5:154345600-154348600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr5:154345600-154348800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr5:154345600-154348800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr5:154345600-154348800	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr5:154345600-154349000	Strong transcription	Liver	Liver
48	chr5:154345600-154349200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr5:154345800-154348800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr5:154345800-154348800	Strong transcription	Skeletal Muscle Female	skeletal muscle

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