Variant report

Variant rs17116489
Chromosome Location chr5:154217616-154217617
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:154196000-154229200 Weak transcription Psoas Muscle Psoas
2 chr5:154201000-154228000 Weak transcription Fetal Brain Male brain
3 chr5:154203400-154229000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
4 chr5:154210200-154229000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr5:154210800-154229000 Weak transcription Fetal Kidney kidney
6 chr5:154210800-154229800 Weak transcription Fetal Thymus thymus
7 chr5:154211400-154221600 Weak transcription Thymus Thymus
8 chr5:154211400-154228800 Weak transcription Fetal Brain Female brain
9 chr5:154211400-154229400 Weak transcription H9 Cell Line embryonic stem cell
10 chr5:154211400-154229400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
11 chr5:154211400-154229800 Weak transcription Pancreas Pancrea
12 chr5:154211400-154235800 Weak transcription Dnd41 blood
13 chr5:154211600-154220400 Weak transcription iPS-18 Cell Line embryonic stem cell
14 chr5:154211600-154220600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr5:154211800-154222600 Weak transcription HUES6 Cell Line embryonic stem cell
16 chr5:154211800-154229000 Weak transcription iPS-20b Cell Line embryonic stem cell
17 chr5:154211800-154229200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr5:154212400-154229200 Weak transcription HUES48 Cell Line embryonic stem cell
19 chr5:154212600-154229400 Weak transcription HUES64 Cell Line embryonic stem cell
20 chr5:154214400-154221600 Strong transcription Fetal Stomach stomach
21 chr5:154214600-154217800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
22 chr5:154214600-154217800 Strong transcription Fetal Muscle Trunk muscle
23 chr5:154214600-154218200 Enhancers Fetal Intestine Large intestine
24 chr5:154214600-154218200 Enhancers Fetal Intestine Small intestine
25 chr5:154214600-154220400 Weak transcription Primary hematopoietic stem cells short term culture blood
26 chr5:154214600-154220600 Weak transcription Primary T cells from cord blood blood
27 chr5:154214600-154229200 Weak transcription Esophagus oesophagus
28 chr5:154214600-154229400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
29 chr5:154214600-154229800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr5:154214800-154220200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr5:154214800-154220600 Weak transcription Right Atrium heart
32 chr5:154214800-154229400 Weak transcription H1 Cell Line embryonic stem cell
33 chr5:154214800-154230000 Weak transcription Sigmoid Colon Sigmoid Colon
34 chr5:154214800-154236400 Weak transcription GM12878-XiMat blood
35 chr5:154215000-154222600 Weak transcription Stomach Mucosa stomach
36 chr5:154215000-154224400 Weak transcription Brain Inferior Temporal Lobe brain
37 chr5:154215000-154224400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
38 chr5:154215000-154229000 Weak transcription NHLF lung
39 chr5:154215000-154229800 Weak transcription Placenta Placenta
40 chr5:154215200-154217800 Enhancers K562 blood
41 chr5:154215200-154220000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr5:154215200-154220600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
43 chr5:154215200-154220600 Weak transcription Colon Smooth Muscle Colon
44 chr5:154215200-154220600 Weak transcription Fetal Heart heart
45 chr5:154215200-154222600 Weak transcription Rectal Smooth Muscle rectum
46 chr5:154215200-154228800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
47 chr5:154215200-154228800 Weak transcription Cortex derived primary cultured neurospheres brain
48 chr5:154215200-154229200 Weak transcription Colonic Mucosa Colon
49 chr5:154215200-154236400 Weak transcription A549 lung
50 chr5:154215600-154218000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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