Variant report

Variant	rs1421819
Chromosome Location	chr5:154336832-154336833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154315200..154317795-chr5:154335501..154337336,2	K562	blood:
2	chr5:154335910..154338259-chr5:154338670..154340658,2	K562	blood:

Variant related genes	Relation type
ENSG00000082516	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1035368	1.00[TSI][hapmap]
rs10515727	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12186480	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187572	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12187890	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187921	0.91[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs12187934	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12187974	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188149	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188498	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12188906	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12189508	0.90[EUR][1000 genomes]
rs12300	0.90[TSI][hapmap]
rs1421813	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421814	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421815	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs14922	0.83[ASN][1000 genomes]
rs17096232	0.91[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116417	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116421	1.00[TSI][hapmap]
rs17116433	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs17116442	1.00[TSI][hapmap]
rs17116455	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116489	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116534	1.00[CHB][hapmap];1.00[TSI][hapmap]
rs17116638	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116669	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17116707	1.00[JPT][hapmap]
rs186971	0.81[AMR][1000 genomes]
rs1974776	1.00[TSI][hapmap]
rs1974777	1.00[TSI][hapmap]
rs2047305	1.00[JPT][hapmap]
rs2112223	1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs2161128	0.80[AMR][1000 genomes]
rs2258437	0.83[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes]
rs2291780	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544859	0.81[AMR][1000 genomes]
rs2544866	0.80[AMR][1000 genomes]
rs2544880	1.00[TSI][hapmap]
rs2544884	1.00[TSI][hapmap];0.80[AMR][1000 genomes]
rs2644743	1.00[TSI][hapmap]
rs2644744	1.00[CHB][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs2644746	0.80[AMR][1000 genomes]
rs2688198	1.00[CHB][hapmap];1.00[TSI][hapmap]
rs2688201	1.00[TSI][hapmap]
rs2688208	1.00[CHB][hapmap]
rs28372688	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs348739	1.00[TSI][hapmap]
rs348748	0.80[AMR][1000 genomes]
rs348749	0.80[AMR][1000 genomes]
rs348750	1.00[TSI][hapmap]
rs348751	0.80[AMR][1000 genomes]
rs348752	1.00[TSI][hapmap];0.80[AMR][1000 genomes]
rs348754	0.80[AMR][1000 genomes]
rs3776984	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs39614	1.00[TSI][hapmap]
rs55692274	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55770418	0.83[AMR][1000 genomes]
rs56773390	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56895891	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61145644	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6580123	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6865950	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6871813	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6895588	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6895702	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6895741	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs702742	1.00[TSI][hapmap]
rs73280705	0.80[AMR][1000 genomes]
rs73806917	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73807206	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73807207	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73807213	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73807216	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73809507	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709899	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7716019	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs816717	1.00[TSI][hapmap]
rs816718	1.00[CHB][hapmap];0.95[TSI][hapmap]
rs816720	1.00[TSI][hapmap]
rs888694	0.85[AMR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154321200-154337400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:154321200-154338000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:154321400-154338000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr5:154321400-154338200	Weak transcription	Lung	lung
5	chr5:154321400-154338600	Weak transcription	Gastric	stomach
6	chr5:154321400-154338800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:154321400-154339000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:154321400-154346000	Weak transcription	Colonic Mucosa	Colon
9	chr5:154321600-154337400	Weak transcription	Fetal Intestine Small	intestine
10	chr5:154321600-154337400	Weak transcription	Ovary	ovary
11	chr5:154321600-154338000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:154321600-154338200	Weak transcription	Aorta	Aorta
13	chr5:154321600-154338800	Weak transcription	Fetal Kidney	kidney
14	chr5:154321600-154340000	Weak transcription	HSMMtube	muscle
15	chr5:154321600-154343400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr5:154321600-154345600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:154321800-154338600	Weak transcription	Fetal Muscle Leg	muscle
18	chr5:154321800-154352200	Weak transcription	Right Ventricle	heart
19	chr5:154322000-154350000	Weak transcription	Fetal Brain Male	brain
20	chr5:154322200-154338800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:154322400-154337800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr5:154322400-154338400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr5:154322400-154338600	Weak transcription	NHLF	lung
24	chr5:154322400-154338800	Weak transcription	HMEC	breast
25	chr5:154322400-154338800	Weak transcription	NHDF-Ad	bronchial
26	chr5:154322400-154339000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr5:154322400-154349600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr5:154322600-154337800	Weak transcription	Fetal Lung	lung
29	chr5:154322600-154364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr5:154322800-154346000	Weak transcription	Colon Smooth Muscle	Colon
31	chr5:154323000-154337600	Weak transcription	Thymus	Thymus
32	chr5:154323000-154337800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr5:154323000-154338200	Weak transcription	Pancreas	Pancrea
34	chr5:154324800-154338600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr5:154325000-154338200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr5:154325000-154338600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr5:154325200-154338600	Weak transcription	Fetal Brain Female	brain
38	chr5:154325400-154337400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr5:154325400-154340800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr5:154325800-154337200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr5:154325800-154338600	Weak transcription	NHEK	skin
42	chr5:154326000-154338800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr5:154327400-154338800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr5:154327400-154339000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr5:154327600-154351600	Weak transcription	Fetal Heart	heart
46	chr5:154328800-154338200	Weak transcription	Brain Angular Gyrus	brain
47	chr5:154328800-154338800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr5:154328800-154338800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr5:154329200-154338200	Weak transcription	Brain Hippocampus Middle	brain
50	chr5:154329200-154339200	Weak transcription	Hela-S3	cervix

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