Variant report

Variant	rs186971
Chromosome Location	chr5:154358534-154358535
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154350792..154353611-chr5:154357182..154359938,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1035368	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10515727	0.81[AMR][1000 genomes]
rs12187890	0.81[AMR][1000 genomes]
rs12300	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1421819	0.81[AMR][1000 genomes]
rs164195	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17116442	0.86[EUR][1000 genomes]
rs17116534	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs180846	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1974776	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1974777	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2042168	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2112223	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2161128	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2258437	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2544859	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2544866	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2544874	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2544875	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2544876	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2544880	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2544884	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2560063	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2644743	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2644744	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2644746	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2688186	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688187	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2688188	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688189	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688190	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2688191	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688193	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2688195	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2688198	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2688199	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2688200	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688201	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688206	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2688208	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs348739	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs348748	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs348749	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs348750	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs348751	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs348752	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs348754	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs39614	0.86[EUR][1000 genomes]
rs4354100	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4958771	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55770418	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61145644	0.83[AMR][1000 genomes]
rs6871813	0.83[AMR][1000 genomes]
rs6879277	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6884416	0.89[EUR][1000 genomes]
rs6895588	0.81[AMR][1000 genomes]
rs702742	0.89[EUR][1000 genomes]
rs73280705	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73807206	0.81[AMR][1000 genomes]
rs73807213	0.81[AMR][1000 genomes]
rs816717	0.84[EUR][1000 genomes]
rs816718	0.82[EUR][1000 genomes]
rs816720	0.90[EUR][1000 genomes]
rs816722	0.91[EUR][1000 genomes]
rs816743	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs888694	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9942412	0.82[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154322600-154364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:154339200-154361200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:154341400-154366600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:154342800-154363400	Weak transcription	Brain Germinal Matrix	brain
5	chr5:154348600-154360200	Weak transcription	Fetal Brain Female	brain
6	chr5:154350800-154358600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr5:154355600-154361200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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