Variant report

Variant	rs2688195
Chromosome Location	chr5:154257853-154257854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154247235..154249855-chr5:154257849..154259847,2	MCF-7	breast:
2	chr5:154236696..154239657-chr5:154255022..154258392,4	MCF-7	breast:
3	chr5:154257361..154260035-chr5:154261444..154263229,2	MCF-7	breast:
4	chr5:154256944..154260356-chr5:154260971..154266243,8	K562	blood:
5	chr5:154257449..154260221-chr5:154262171..154263946,4	K562	blood:

Variant related genes	Relation type
ENSG00000155508	Chromatin interaction
ENSG00000170271	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1035368	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12300	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17116442	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17116534	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs180846	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs186971	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1974776	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1974777	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2042168	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2112223	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2161128	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2258437	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2544859	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2544866	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2544874	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2544875	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2544876	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2544880	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2544884	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2560063	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2644743	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2644744	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2644746	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2688186	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2688187	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688188	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2688189	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688190	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688191	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2688193	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2688194	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2688198	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688199	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2688200	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2688201	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2688206	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688208	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs348739	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs348748	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs348749	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs348750	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs348751	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs348752	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs348754	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs39614	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4354100	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4958771	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55770418	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56374414	0.81[EUR][1000 genomes]
rs59525998	0.81[EUR][1000 genomes]
rs59749917	0.81[EUR][1000 genomes]
rs6879277	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6884416	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs702742	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73280705	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs816717	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs816718	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs816720	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs816722	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs816743	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs888694	0.80[AMR][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154239600-154263800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:154240600-154264800	Weak transcription	Stomach Mucosa	stomach
3	chr5:154248600-154267600	Weak transcription	Right Atrium	heart
4	chr5:154249600-154259000	Strong transcription	HSMM	muscle
5	chr5:154252200-154264200	Weak transcription	Fetal Heart	heart
6	chr5:154253800-154258000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:154255200-154258400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:154255200-154258400	Weak transcription	Aorta	Aorta
9	chr5:154255200-154258600	Weak transcription	Gastric	stomach
10	chr5:154255400-154258200	Weak transcription	Colonic Mucosa	Colon
11	chr5:154255400-154258400	Weak transcription	Ovary	ovary
12	chr5:154255400-154258400	Weak transcription	Pancreas	Pancrea
13	chr5:154255600-154258200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr5:154255600-154258200	Weak transcription	Right Ventricle	heart
15	chr5:154255600-154258400	Weak transcription	Spleen	Spleen
16	chr5:154255600-154261000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr5:154255600-154266000	Weak transcription	NHLF	lung
18	chr5:154255800-154258200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr5:154255800-154258200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr5:154255800-154258400	Weak transcription	Left Ventricle	heart
21	chr5:154255800-154264200	Weak transcription	Fetal Brain Male	brain
22	chr5:154255800-154265000	Weak transcription	Brain Substantia Nigra	brain
23	chr5:154255800-154265200	Weak transcription	Fetal Kidney	kidney
24	chr5:154256000-154258000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr5:154256000-154258200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr5:154256000-154258200	Weak transcription	Fetal Lung	lung
27	chr5:154256000-154258200	Weak transcription	Small Intestine	intestine
28	chr5:154256000-154258200	Weak transcription	HepG2	liver
29	chr5:154256000-154260800	Weak transcription	Colon Smooth Muscle	Colon
30	chr5:154256000-154264800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr5:154256000-154265200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr5:154256000-154266000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr5:154256200-154258200	Weak transcription	Brain Anterior Caudate	brain
34	chr5:154256200-154258200	Weak transcription	Brain Hippocampus Middle	brain
35	chr5:154256200-154258200	Weak transcription	Psoas Muscle	Psoas
36	chr5:154256200-154261000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
37	chr5:154256400-154258200	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr5:154256400-154258200	Weak transcription	Osteobl	bone
39	chr5:154256600-154258400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr5:154256800-154258200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr5:154256800-154258200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr5:154256800-154258400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr5:154256800-154258800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr5:154256800-154259000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr5:154256800-154259000	ZNF genes & repeats	Fetal Intestine Small	intestine
46	chr5:154256800-154259000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
47	chr5:154256800-154259200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
48	chr5:154256800-154259600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr5:154256800-154259600	ZNF genes & repeats	Thymus	Thymus
50	chr5:154256800-154259800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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