Variant report

Variant	rs2688187
Chromosome Location	chr5:154261759-154261760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154257361..154260035-chr5:154261444..154263229,2	MCF-7	breast:
2	chr5:154236638..154239257-chr5:154260752..154264470,3	K562	blood:
3	chr5:154256944..154260356-chr5:154260971..154266243,8	K562	blood:
4	chr5:154255319..154256934-chr5:154260539..154262429,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155508	Chromatin interaction
ENSG00000170271	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1035368	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12188149	0.82[AMR][1000 genomes]
rs12188828	0.85[EUR][1000 genomes]
rs12300	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421813	0.83[AMR][1000 genomes]
rs164195	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17116411	0.85[EUR][1000 genomes]
rs17116414	0.85[EUR][1000 genomes]
rs17116421	0.85[EUR][1000 genomes]
rs17116442	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17116534	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs180846	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs186971	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1974776	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1974777	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2042168	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2112223	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2161128	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2258437	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2396999	0.81[EUR][1000 genomes]
rs2544859	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2544866	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2544874	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544875	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544876	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544880	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544884	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2560063	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2644743	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2644744	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2644746	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2688186	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688188	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688189	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2688190	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688191	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688193	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2688194	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2688195	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688198	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688199	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688200	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688201	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688206	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688208	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348739	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs348748	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs348749	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs348750	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs348751	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs348752	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs348754	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs39614	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4354100	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4958771	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55770418	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56374414	0.87[EUR][1000 genomes]
rs58415346	0.85[EUR][1000 genomes]
rs59525998	0.87[EUR][1000 genomes]
rs59749917	0.87[EUR][1000 genomes]
rs6865950	0.83[AMR][1000 genomes]
rs6879277	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6884416	0.97[EUR][1000 genomes]
rs702742	0.97[EUR][1000 genomes]
rs73276742	0.85[EUR][1000 genomes]
rs73280705	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7709899	0.83[AMR][1000 genomes]
rs7723269	0.85[EUR][1000 genomes]
rs7728194	0.82[EUR][1000 genomes]
rs816717	0.92[EUR][1000 genomes]
rs816718	0.91[EUR][1000 genomes]
rs816720	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs816722	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816743	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs888694	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9942412	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154239600-154263800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:154240600-154264800	Weak transcription	Stomach Mucosa	stomach
3	chr5:154248600-154267600	Weak transcription	Right Atrium	heart
4	chr5:154252200-154264200	Weak transcription	Fetal Heart	heart
5	chr5:154255600-154266000	Weak transcription	NHLF	lung
6	chr5:154255800-154264200	Weak transcription	Fetal Brain Male	brain
7	chr5:154255800-154265000	Weak transcription	Brain Substantia Nigra	brain
8	chr5:154255800-154265200	Weak transcription	Fetal Kidney	kidney
9	chr5:154256000-154264800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr5:154256000-154265200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr5:154256000-154266000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:154256800-154264600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr5:154256800-154264800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr5:154256800-154265000	Weak transcription	K562	blood
15	chr5:154257000-154266000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr5:154257200-154265200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr5:154257600-154266000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr5:154258600-154264000	Weak transcription	Psoas Muscle	Psoas
19	chr5:154258600-154264600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr5:154258800-154264000	Weak transcription	A549	lung
21	chr5:154258800-154264600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr5:154258800-154264800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr5:154258800-154264800	Weak transcription	NHDF-Ad	bronchial
24	chr5:154258800-154265000	Weak transcription	Brain Angular Gyrus	brain
25	chr5:154258800-154265600	Weak transcription	Gastric	stomach
26	chr5:154258800-154265800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr5:154259000-154261800	Weak transcription	Adipose Nuclei	Adipose
28	chr5:154259000-154262000	Weak transcription	Left Ventricle	heart
29	chr5:154259000-154262800	Weak transcription	Fetal Brain Female	brain
30	chr5:154259000-154264000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:154259000-154264000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr5:154259000-154264000	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr5:154259000-154264000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr5:154259000-154264000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr5:154259000-154264000	Weak transcription	Fetal Lung	lung
36	chr5:154259000-154264000	Weak transcription	Fetal Stomach	stomach
37	chr5:154259000-154264000	Weak transcription	Ovary	ovary
38	chr5:154259000-154264000	Weak transcription	HSMM	muscle
39	chr5:154259000-154264200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr5:154259000-154264200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr5:154259000-154264200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr5:154259000-154264200	Weak transcription	Aorta	Aorta
43	chr5:154259000-154264200	Weak transcription	Brain Anterior Caudate	brain
44	chr5:154259000-154264200	Weak transcription	Lung	lung
45	chr5:154259000-154264200	Weak transcription	Dnd41	blood
46	chr5:154259000-154264200	Weak transcription	GM12878-XiMat	blood
47	chr5:154259000-154264400	Weak transcription	Osteobl	bone
48	chr5:154259000-154264600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr5:154259000-154264600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr5:154259000-154264800	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links