Variant report

Variant	rs164195
Chromosome Location	chr5:154356755-154356756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1035368	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12300	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17116442	0.83[EUR][1000 genomes]
rs17116534	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs180846	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs186971	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1974776	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1974777	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2042168	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2112223	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2161128	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2258437	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2544859	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544866	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2544874	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2544875	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2544876	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2544880	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2544884	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2560063	0.86[EUR][1000 genomes]
rs2644743	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2644744	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2644746	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2688186	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2688187	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2688188	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2688189	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2688190	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2688191	0.88[EUR][1000 genomes]
rs2688193	0.86[EUR][1000 genomes]
rs2688198	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2688199	0.85[EUR][1000 genomes]
rs2688200	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2688201	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2688206	0.88[EUR][1000 genomes]
rs2688208	0.86[EUR][1000 genomes]
rs348739	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs348748	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs348749	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs348750	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs348751	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs348752	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs348754	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs39614	0.83[EUR][1000 genomes]
rs4354100	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4958771	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55770418	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6879277	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6884416	0.85[EUR][1000 genomes]
rs702742	0.85[EUR][1000 genomes]
rs73280705	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs816717	0.81[EUR][1000 genomes]
rs816720	0.86[EUR][1000 genomes]
rs816722	0.88[EUR][1000 genomes]
rs816743	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs888694	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154322600-154364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:154339200-154361200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:154340200-154357200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:154341400-154366600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:154342800-154363400	Weak transcription	Brain Germinal Matrix	brain
6	chr5:154343400-154356800	Weak transcription	Hela-S3	cervix
7	chr5:154345000-154357000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr5:154346000-154356800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr5:154346400-154357200	Weak transcription	Aorta	Aorta
10	chr5:154346800-154357000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:154348400-154356800	Weak transcription	Left Ventricle	heart
12	chr5:154348400-154357400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr5:154348600-154360200	Weak transcription	Fetal Brain Female	brain
14	chr5:154348800-154357000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:154348800-154357000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr5:154348800-154357400	Weak transcription	Primary T cells from cord blood	blood
17	chr5:154348800-154357400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:154349000-154357000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr5:154349200-154357000	Weak transcription	K562	blood
20	chr5:154349400-154357000	Weak transcription	Fetal Muscle Leg	muscle
21	chr5:154349600-154357200	Weak transcription	A549	lung
22	chr5:154350600-154357000	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr5:154350600-154357400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr5:154350800-154357200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr5:154350800-154358600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr5:154355600-154361200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr5:154355800-154357600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr5:154356200-154357800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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