Variant report

Variant	rs2688190
Chromosome Location	chr5:154258819-154258820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154247235..154249855-chr5:154257849..154259847,2	MCF-7	breast:
2	chr5:154257361..154260035-chr5:154261444..154263229,2	MCF-7	breast:
3	chr5:154256944..154260356-chr5:154260971..154266243,8	K562	blood:
4	chr5:154252871..154255251-chr5:154258261..154260137,2	K562	blood:
5	chr5:154032204..154034670-chr5:154258482..154261349,2	MCF-7	breast:
6	chr5:154257449..154260221-chr5:154262171..154263946,4	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1035368	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12188828	0.85[EUR][1000 genomes]
rs12300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164195	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17116411	0.85[EUR][1000 genomes]
rs17116414	0.85[EUR][1000 genomes]
rs17116421	0.85[EUR][1000 genomes]
rs17116442	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17116534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs180846	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs186971	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1974776	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1974777	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2042168	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2112223	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2161128	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2258437	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2396999	0.81[EUR][1000 genomes]
rs2544859	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2544866	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2544874	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544875	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544876	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544880	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544884	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2560063	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2644743	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2644744	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2644746	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2688186	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688187	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688188	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688189	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2688191	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688193	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2688194	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2688195	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688199	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688200	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688201	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688206	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688208	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348739	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs348748	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs348749	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs348750	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs348751	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs348752	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs348754	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs39614	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4354100	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4958771	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55770418	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56374414	0.87[EUR][1000 genomes]
rs58415346	0.85[EUR][1000 genomes]
rs59525998	0.87[EUR][1000 genomes]
rs59749917	0.87[EUR][1000 genomes]
rs6879277	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6884416	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs702742	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73276742	0.85[EUR][1000 genomes]
rs73280705	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7723269	0.85[EUR][1000 genomes]
rs7728194	0.82[EUR][1000 genomes]
rs816717	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs816718	0.91[EUR][1000 genomes]
rs816720	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs816722	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs816743	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs888694	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9942412	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154239600-154263800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:154240600-154264800	Weak transcription	Stomach Mucosa	stomach
3	chr5:154248600-154267600	Weak transcription	Right Atrium	heart
4	chr5:154249600-154259000	Strong transcription	HSMM	muscle
5	chr5:154252200-154264200	Weak transcription	Fetal Heart	heart
6	chr5:154255600-154261000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr5:154255600-154266000	Weak transcription	NHLF	lung
8	chr5:154255800-154264200	Weak transcription	Fetal Brain Male	brain
9	chr5:154255800-154265000	Weak transcription	Brain Substantia Nigra	brain
10	chr5:154255800-154265200	Weak transcription	Fetal Kidney	kidney
11	chr5:154256000-154260800	Weak transcription	Colon Smooth Muscle	Colon
12	chr5:154256000-154264800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr5:154256000-154265200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr5:154256000-154266000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr5:154256200-154261000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
16	chr5:154256800-154259000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:154256800-154259000	ZNF genes & repeats	Fetal Intestine Small	intestine
18	chr5:154256800-154259000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
19	chr5:154256800-154259200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
20	chr5:154256800-154259600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr5:154256800-154259600	ZNF genes & repeats	Thymus	Thymus
22	chr5:154256800-154259800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
23	chr5:154256800-154260000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
24	chr5:154256800-154260000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
25	chr5:154256800-154260800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr5:154256800-154264600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr5:154256800-154264800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr5:154256800-154265000	Weak transcription	K562	blood
29	chr5:154257000-154259000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr5:154257000-154259000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
31	chr5:154257000-154259600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr5:154257000-154259600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr5:154257000-154259600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr5:154257000-154259800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
35	chr5:154257000-154259800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
36	chr5:154257000-154260000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr5:154257000-154266000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr5:154257200-154259600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
39	chr5:154257200-154265200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr5:154257400-154259000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr5:154257600-154259000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
42	chr5:154257600-154259000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
43	chr5:154257600-154259000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr5:154257600-154259000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr5:154257600-154259000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
46	chr5:154257600-154259000	ZNF genes & repeats	Fetal Thymus	thymus
47	chr5:154257600-154259000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
48	chr5:154257600-154259000	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
49	chr5:154257600-154259000	ZNF genes & repeats	HSMMtube	muscle
50	chr5:154257600-154259200	ZNF genes & repeats	Primary B cells from peripheral blood	blood

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