Variant report

Variant	rs180846
Chromosome Location	chr5:154340522-154340523
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154335910..154338259-chr5:154338670..154340658,2	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1035368	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12187921	1.00[CHB][hapmap]
rs12188828	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs12300	0.87[CEU][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs164195	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17116411	0.80[EUR][1000 genomes]
rs17116414	0.80[EUR][1000 genomes]
rs17116421	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs17116433	1.00[CHB][hapmap]
rs17116442	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17116534	1.00[CEU][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs186971	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1974776	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1974777	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2042168	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2112223	1.00[CEU][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2161128	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2258437	0.93[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2431184	0.85[ASN][1000 genomes]
rs2544859	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2544860	0.86[CHB][hapmap]
rs2544866	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2544874	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2544875	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2544876	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2544880	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2544884	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2560063	0.94[EUR][1000 genomes]
rs2644743	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2644744	1.00[CEU][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2644746	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2688186	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2688187	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2688188	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2688189	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2688190	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2688191	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2688193	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2688194	0.81[EUR][1000 genomes]
rs2688195	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2688198	1.00[CEU][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2688199	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2688200	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2688201	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2688206	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2688208	1.00[CEU][hapmap];0.81[YRI][hapmap];0.94[EUR][1000 genomes]
rs32427	0.86[CHB][hapmap]
rs348739	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs348748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348749	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348750	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs348751	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs348752	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs348754	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs39614	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs4354100	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs454161	0.85[ASN][1000 genomes]
rs4958771	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55770418	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56374414	0.83[EUR][1000 genomes]
rs58415346	0.80[EUR][1000 genomes]
rs59525998	0.83[EUR][1000 genomes]
rs59749917	0.83[EUR][1000 genomes]
rs6879277	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6884416	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs702742	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73276742	0.80[EUR][1000 genomes]
rs73280705	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7723269	0.80[EUR][1000 genomes]
rs816717	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs816718	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs816720	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs816722	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs816743	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs816747	0.85[CHB][hapmap]
rs888694	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154321400-154346000	Weak transcription	Colonic Mucosa	Colon
2	chr5:154321600-154343400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:154321600-154345600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:154321800-154352200	Weak transcription	Right Ventricle	heart
5	chr5:154322000-154350000	Weak transcription	Fetal Brain Male	brain
6	chr5:154322400-154349600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:154322600-154364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr5:154322800-154346000	Weak transcription	Colon Smooth Muscle	Colon
9	chr5:154325400-154340800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr5:154327600-154351600	Weak transcription	Fetal Heart	heart
11	chr5:154329600-154345800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr5:154329800-154347200	Weak transcription	Psoas Muscle	Psoas
13	chr5:154330600-154345800	Weak transcription	Small Intestine	intestine
14	chr5:154331000-154346200	Weak transcription	K562	blood
15	chr5:154334800-154347200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr5:154335200-154342200	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr5:154335400-154342400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:154335400-154344400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr5:154335600-154350600	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr5:154335800-154341000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr5:154335800-154342400	Strong transcription	Primary B cells from peripheral blood	blood
22	chr5:154335800-154343600	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr5:154335800-154344400	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr5:154335800-154348000	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr5:154335800-154348400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr5:154335800-154349000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr5:154336000-154341600	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr5:154336000-154341800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr5:154336000-154342200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr5:154336000-154349000	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr5:154336000-154349400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr5:154336200-154341600	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr5:154336200-154341800	Strong transcription	Primary hematopoietic stem cells	blood
34	chr5:154336200-154341800	Strong transcription	Adipose Nuclei	Adipose
35	chr5:154336200-154343800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr5:154336200-154348800	Strong transcription	Fetal Intestine Large	intestine
37	chr5:154336200-154349000	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr5:154336200-154349400	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr5:154336400-154341600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr5:154336400-154341800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr5:154336400-154341800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr5:154336400-154342400	Strong transcription	Liver	Liver
43	chr5:154336400-154342400	Strong transcription	Fetal Thymus	thymus
44	chr5:154336400-154343000	Strong transcription	Dnd41	blood
45	chr5:154336600-154341000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr5:154336600-154341000	Strong transcription	Osteobl	bone
47	chr5:154336600-154341400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr5:154336600-154341400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr5:154336600-154341800	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr5:154336600-154342600	Strong transcription	Rectal Mucosa Donor 31	rectum

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