Variant report

Variant	rs2431184
Chromosome Location	chr5:154357463-154357464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154350792..154353611-chr5:154357182..154359938,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1035368	0.85[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11167705	0.88[ASN][1000 genomes]
rs12187921	0.85[CHB][hapmap]
rs12188828	0.85[ASN][1000 genomes]
rs12300	0.86[JPT][hapmap]
rs158134	0.86[ASN][1000 genomes]
rs17116411	0.85[ASN][1000 genomes]
rs17116414	0.85[ASN][1000 genomes]
rs17116421	0.85[ASN][1000 genomes]
rs17116433	0.85[CHB][hapmap]
rs17116442	0.85[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17116534	0.86[JPT][hapmap]
rs180846	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs1974776	0.85[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1974777	0.85[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2042168	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2047305	0.85[CEU][hapmap]
rs2112223	0.86[JPT][hapmap]
rs2161128	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2258437	0.85[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2544860	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2544866	0.96[ASN][1000 genomes]
rs2544875	0.92[ASN][1000 genomes]
rs2544880	0.85[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2544884	0.92[CHD][hapmap];0.85[ASN][1000 genomes]
rs255529	0.83[ASN][1000 genomes]
rs2644743	0.85[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2644744	0.86[JPT][hapmap]
rs2644746	0.81[ASN][1000 genomes]
rs2688186	0.92[ASN][1000 genomes]
rs2688188	0.92[ASN][1000 genomes]
rs2688191	0.92[ASN][1000 genomes]
rs2688193	0.92[ASN][1000 genomes]
rs2688198	0.86[JPT][hapmap]
rs2688200	0.90[ASN][1000 genomes]
rs2688201	0.85[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2688208	0.86[JPT][hapmap]
rs286623	0.84[ASN][1000 genomes]
rs286624	0.86[ASN][1000 genomes]
rs32427	1.00[JPT][hapmap]
rs348739	0.85[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs348748	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs348749	0.82[CHB][hapmap];0.85[ASN][1000 genomes]
rs348750	0.85[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs348751	0.96[ASN][1000 genomes]
rs348752	0.85[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs348754	0.96[ASN][1000 genomes]
rs39614	0.85[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4354100	0.96[ASN][1000 genomes]
rs454161	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958771	0.96[ASN][1000 genomes]
rs56374414	0.89[ASN][1000 genomes]
rs58415346	0.89[ASN][1000 genomes]
rs59525998	0.89[ASN][1000 genomes]
rs59749917	0.81[ASN][1000 genomes]
rs6580122	0.86[ASN][1000 genomes]
rs6879277	0.96[ASN][1000 genomes]
rs6884416	0.92[ASN][1000 genomes]
rs702742	0.85[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs73276742	0.89[ASN][1000 genomes]
rs73280705	0.96[ASN][1000 genomes]
rs7723269	0.85[ASN][1000 genomes]
rs816717	0.85[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs816718	0.90[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs816720	0.85[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs816722	0.85[ASN][1000 genomes]
rs816734	0.84[ASN][1000 genomes]
rs816743	0.94[ASN][1000 genomes]
rs816747	0.92[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2431184	LARP1	cis	Whole Blood	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154322600-154364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:154339200-154361200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:154341400-154366600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:154342800-154363400	Weak transcription	Brain Germinal Matrix	brain
5	chr5:154348600-154360200	Weak transcription	Fetal Brain Female	brain
6	chr5:154350800-154358600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr5:154355600-154361200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:154355800-154357600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr5:154356200-154357800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:154357000-154357600	Enhancers	K562	blood

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