Variant report

Variant	rs286623
Chromosome Location	chr5:154366183-154366184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1035368	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11167705	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12300	0.86[JPT][hapmap]
rs158134	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17116442	1.00[JPT][hapmap]
rs17116534	0.86[JPT][hapmap]
rs1974776	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1974777	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2042168	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2112223	0.86[JPT][hapmap]
rs2161128	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2258437	1.00[JPT][hapmap]
rs2431184	0.84[ASN][1000 genomes]
rs2544860	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2544866	0.81[ASN][1000 genomes]
rs2544880	1.00[JPT][hapmap]
rs2644743	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2644744	0.86[JPT][hapmap]
rs2688198	0.86[JPT][hapmap]
rs2688201	1.00[JPT][hapmap]
rs2688208	0.86[JPT][hapmap]
rs286624	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs32427	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs348739	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs348750	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs348751	0.81[ASN][1000 genomes]
rs348752	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs348754	0.81[ASN][1000 genomes]
rs39614	1.00[JPT][hapmap]
rs4354100	0.81[ASN][1000 genomes]
rs454161	0.84[ASN][1000 genomes]
rs4958771	0.81[ASN][1000 genomes]
rs6580122	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6879277	0.81[ASN][1000 genomes]
rs702742	1.00[JPT][hapmap]
rs73280705	0.81[ASN][1000 genomes]
rs816717	1.00[JPT][hapmap]
rs816718	1.00[JPT][hapmap]
rs816720	1.00[JPT][hapmap]
rs816734	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs816747	1.00[CEU][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154341400-154366600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:154365000-154372400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:154365200-154366200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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