The 2.0 version of rSNPBase

Variant report

Variant rs816734
Chromosome Location chr5:154272947-154272948
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:154262800-154300800 Strong transcription Fetal Brain Female brain
2 chr5:154264000-154276600 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr5:154264000-154312800 Strong transcription Fetal Adrenal Gland Adrenal Gland
4 chr5:154264200-154275600 Strong transcription Brain Anterior Caudate brain
5 chr5:154264400-154274200 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr5:154265200-154276400 Strong transcription Skeletal Muscle Female skeletal muscle
7 chr5:154265200-154278000 Strong transcription Fetal Muscle Trunk muscle
8 chr5:154265200-154279800 Weak transcription ES-WA7 Cell Line embryonic stem cell
9 chr5:154265800-154274200 Strong transcription Fetal Kidney kidney
10 chr5:154266000-154274000 Strong transcription Brain Inferior Temporal Lobe brain
11 chr5:154266000-154275800 Strong transcription Brain Cingulate Gyrus brain
12 chr5:154266200-154276400 Strong transcription Brain Hippocampus Middle brain
13 chr5:154266200-154285000 Strong transcription Primary T helper 17 cells PMA-I stimulated --
14 chr5:154266200-154287600 Strong transcription HepG2 liver
15 chr5:154266200-154288800 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr5:154266200-154312200 Strong transcription Fetal Thymus thymus
17 chr5:154266200-154316600 Weak transcription Stomach Mucosa stomach
18 chr5:154266400-154278200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
19 chr5:154266400-154278800 Strong transcription H9 Cell Line embryonic stem cell
20 chr5:154266400-154293600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
21 chr5:154266400-154311200 Strong transcription Primary monocytes fromperipheralblood blood
22 chr5:154266400-154312800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
23 chr5:154266400-154315600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
24 chr5:154266600-154274200 Strong transcription Sigmoid Colon Sigmoid Colon
25 chr5:154266600-154276200 Strong transcription Brain Substantia Nigra brain
26 chr5:154266600-154276800 Strong transcription GM12878-XiMat blood
27 chr5:154266600-154282800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr5:154266600-154283600 Strong transcription K562 blood
29 chr5:154266600-154284200 Strong transcription Brain Germinal Matrix brain
30 chr5:154266600-154285000 Strong transcription Thymus Thymus
31 chr5:154266600-154292600 Strong transcription Primary T helper naive cells fromperipheralblood blood
32 chr5:154266600-154292800 Strong transcription Left Ventricle heart
33 chr5:154266600-154293000 Strong transcription Dnd41 blood
34 chr5:154266600-154293200 Strong transcription Placenta Placenta
35 chr5:154266600-154294600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
36 chr5:154266600-154312800 Strong transcription Fetal Intestine Large intestine
37 chr5:154266600-154313200 Strong transcription Primary T regulatory cells fromperipheralblood blood
38 chr5:154266600-154313600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
39 chr5:154266800-154273200 Strong transcription HMEC breast
40 chr5:154266800-154274000 Strong transcription A549 lung
41 chr5:154266800-154274200 Strong transcription NHDF-Ad bronchial
42 chr5:154266800-154274400 Strong transcription Fetal Lung lung
43 chr5:154266800-154278800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr5:154266800-154285200 Strong transcription Rectal Mucosa Donor 29 rectum
45 chr5:154266800-154293000 Strong transcription Primary T helper cells PMA-I stimulated --
46 chr5:154266800-154293600 Strong transcription Stomach Smooth Muscle stomach
47 chr5:154267000-154274000 Strong transcription NHEK skin
48 chr5:154267000-154293600 Strong transcription Primary T cells from cord blood blood
49 chr5:154267000-154294400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
50 chr5:154267000-154304400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015