Variant report

Variant	rs2161128
Chromosome Location	chr5:154313424-154313425
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154178549..154181135-chr5:154311775..154314598,2	K562	blood:
2	chr5:154307865..154310770-chr5:154311622..154314495,2	MCF-7	breast:
3	chr5:154313346..154315554-chr5:154316514..154318608,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082516	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1035368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10515727	0.80[AMR][1000 genomes]
rs11167705	0.88[ASN][1000 genomes]
rs12187890	0.80[AMR][1000 genomes]
rs12187921	1.00[CHB][hapmap]
rs12188828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12300	0.87[CEU][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1421819	0.80[AMR][1000 genomes]
rs158134	0.83[ASN][1000 genomes]
rs164195	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17116411	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17116414	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17116421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17116433	1.00[CHB][hapmap]
rs17116442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17116534	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs180846	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs186971	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1974776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1974777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2042168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2112223	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2258437	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2396999	0.93[CEU][hapmap]
rs2431184	0.96[ASN][1000 genomes]
rs2544859	0.93[CEU][hapmap];0.97[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2544860	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2544866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544874	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2544875	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2544876	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2544880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2544884	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs255529	0.82[ASN][1000 genomes]
rs2560063	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2644743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2644744	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2644746	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2688186	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2688187	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2688188	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2688189	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2688190	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2688191	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2688193	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2688194	0.82[EUR][1000 genomes]
rs2688195	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2688198	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2688199	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2688200	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2688201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2688206	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2688208	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs286623	0.81[ASN][1000 genomes]
rs286624	0.83[ASN][1000 genomes]
rs32427	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs348739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348748	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs348749	1.00[CHB][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs348750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348751	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs348754	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4354100	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs454161	0.96[ASN][1000 genomes]
rs4958771	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55770418	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56374414	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58415346	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59525998	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59749917	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6580122	0.86[ASN][1000 genomes]
rs6879277	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6884416	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs702742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73276742	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73280705	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73807206	0.80[AMR][1000 genomes]
rs73807213	0.80[AMR][1000 genomes]
rs7723269	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs816717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs816718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs816720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs816722	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs816734	0.84[ASN][1000 genomes]
rs816743	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs816747	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs888694	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs960499	0.85[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154266200-154316600	Weak transcription	Stomach Mucosa	stomach
2	chr5:154266400-154315600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:154266600-154313600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:154267800-154315600	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr5:154268000-154315600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:154268200-154315000	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:154268200-154315600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr5:154268200-154316200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:154269800-154313600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr5:154269800-154315400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:154269800-154316200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:154273600-154316600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:154276200-154314600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:154283200-154316600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr5:154291600-154316600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:154292600-154316200	Weak transcription	Fetal Heart	heart
17	chr5:154294000-154315400	Strong transcription	Adipose Nuclei	Adipose
18	chr5:154294000-154315800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr5:154294200-154314800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr5:154294400-154315200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr5:154301800-154314200	Strong transcription	Fetal Stomach	stomach
22	chr5:154302600-154315400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr5:154304000-154316400	Weak transcription	Small Intestine	intestine
24	chr5:154304200-154316200	Weak transcription	NHLF	lung
25	chr5:154305200-154315400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr5:154305800-154317000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr5:154306400-154316200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr5:154306800-154316600	Weak transcription	Pancreas	Pancrea
29	chr5:154307000-154316200	Weak transcription	NHDF-Ad	bronchial
30	chr5:154307200-154316600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr5:154307200-154316600	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr5:154307400-154316400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr5:154307400-154316600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr5:154307400-154316600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr5:154307400-154316600	Weak transcription	Esophagus	oesophagus
36	chr5:154307400-154316600	Weak transcription	Gastric	stomach
37	chr5:154307600-154313600	Weak transcription	Fetal Intestine Small	intestine
38	chr5:154307600-154314400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr5:154308400-154315600	Weak transcription	Fetal Brain Male	brain
40	chr5:154309400-154316200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr5:154310000-154316600	Weak transcription	Thymus	Thymus
42	chr5:154310200-154314200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr5:154310400-154316400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr5:154310400-154316600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr5:154310600-154313600	Strong transcription	Primary B cells from cord blood	blood
46	chr5:154310600-154314800	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr5:154311000-154314400	Weak transcription	Hela-S3	cervix
48	chr5:154311000-154316200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr5:154311000-154316200	Weak transcription	Rectal Smooth Muscle	rectum
50	chr5:154311000-154316400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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