Variant report

Variant	rs158134
Chromosome Location	chr5:154359159-154359160
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154350792..154353611-chr5:154357182..154359938,2	K562	blood:
2	chr5:154353720..154356522-chr5:154358959..154360487,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1035368	0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11167705	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12300	0.86[JPT][hapmap]
rs17116442	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs17116534	0.86[JPT][hapmap]
rs1974776	0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1974777	0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2042168	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2112223	0.86[JPT][hapmap]
rs2161128	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2258437	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2431184	0.86[ASN][1000 genomes]
rs2544860	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2544866	0.83[ASN][1000 genomes]
rs2544880	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs2544884	0.85[CHD][hapmap]
rs255529	0.86[ASN][1000 genomes]
rs2644743	0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2644744	0.86[JPT][hapmap]
rs2688198	0.86[JPT][hapmap]
rs2688201	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs2688208	0.86[JPT][hapmap]
rs286623	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs286624	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs32427	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs348739	0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs348750	0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs348751	0.83[ASN][1000 genomes]
rs348752	0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs348754	0.83[ASN][1000 genomes]
rs39614	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs4354100	0.83[ASN][1000 genomes]
rs454161	0.86[ASN][1000 genomes]
rs4958771	0.83[ASN][1000 genomes]
rs6580122	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6879277	0.83[ASN][1000 genomes]
rs702742	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs73280705	0.83[ASN][1000 genomes]
rs816717	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs816718	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs816720	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs816734	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs816743	0.81[ASN][1000 genomes]
rs816747	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs960499	0.83[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154322600-154364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:154339200-154361200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:154341400-154366600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:154342800-154363400	Weak transcription	Brain Germinal Matrix	brain
5	chr5:154348600-154360200	Weak transcription	Fetal Brain Female	brain
6	chr5:154355600-154361200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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