Variant report

Variant	rs816743
Chromosome Location	chr5:154277025-154277026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154275504..154277327-chr5:154280291..154282376,2	K562	blood:
2	chr5:154237688..154239228-chr5:154275528..154278504,2	MCF-7	breast:
3	chr5:154276032..154278866-chr5:154306482..154309276,2	K562	blood:

Variant related genes	Relation type
ENSG00000155508	Chromatin interaction
ENSG00000170271	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1035368	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11167705	0.86[ASN][1000 genomes]
rs12188828	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12300	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1421813	0.80[AMR][1000 genomes]
rs158134	0.81[ASN][1000 genomes]
rs164195	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17116411	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17116414	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17116421	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17116442	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17116534	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs180846	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs186971	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1974776	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1974777	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2042168	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2112223	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2161128	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2258437	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2431184	0.94[ASN][1000 genomes]
rs2544859	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2544866	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2544874	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2544875	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2544876	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2544880	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2544884	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs255529	0.81[ASN][1000 genomes]
rs2560063	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2644743	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2644744	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2644746	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2688186	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2688187	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2688188	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2688189	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2688190	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2688191	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2688193	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2688194	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2688195	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2688198	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2688199	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2688200	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2688201	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2688206	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2688208	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs286624	0.81[ASN][1000 genomes]
rs348739	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs348748	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs348749	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs348750	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs348751	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs348752	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs348754	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs39614	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4354100	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs454161	0.94[ASN][1000 genomes]
rs4958771	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55770418	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56374414	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58415346	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59525998	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59749917	0.84[EUR][1000 genomes]
rs6580122	0.84[ASN][1000 genomes]
rs6865950	0.80[AMR][1000 genomes]
rs6879277	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6884416	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs702742	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73276742	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73280705	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7709899	0.80[AMR][1000 genomes]
rs7723269	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs816717	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs816718	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs816720	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs816722	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs816734	0.82[ASN][1000 genomes]
rs816747	0.87[ASN][1000 genomes]
rs888694	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154262800-154300800	Strong transcription	Fetal Brain Female	brain
2	chr5:154264000-154312800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:154265200-154278000	Strong transcription	Fetal Muscle Trunk	muscle
4	chr5:154265200-154279800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:154266200-154285000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr5:154266200-154287600	Strong transcription	HepG2	liver
7	chr5:154266200-154288800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr5:154266200-154312200	Strong transcription	Fetal Thymus	thymus
9	chr5:154266200-154316600	Weak transcription	Stomach Mucosa	stomach
10	chr5:154266400-154278200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:154266400-154278800	Strong transcription	H9 Cell Line	embryonic stem cell
12	chr5:154266400-154293600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:154266400-154311200	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr5:154266400-154312800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr5:154266400-154315600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:154266600-154282800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:154266600-154283600	Strong transcription	K562	blood
18	chr5:154266600-154284200	Strong transcription	Brain Germinal Matrix	brain
19	chr5:154266600-154285000	Strong transcription	Thymus	Thymus
20	chr5:154266600-154292600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr5:154266600-154292800	Strong transcription	Left Ventricle	heart
22	chr5:154266600-154293000	Strong transcription	Dnd41	blood
23	chr5:154266600-154293200	Strong transcription	Placenta	Placenta
24	chr5:154266600-154294600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:154266600-154312800	Strong transcription	Fetal Intestine Large	intestine
26	chr5:154266600-154313200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr5:154266600-154313600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr5:154266800-154278800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr5:154266800-154285200	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr5:154266800-154293000	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr5:154266800-154293600	Strong transcription	Stomach Smooth Muscle	stomach
32	chr5:154267000-154293600	Strong transcription	Primary T cells from cord blood	blood
33	chr5:154267000-154294400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr5:154267000-154304400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr5:154267000-154312800	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr5:154267200-154287400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr5:154267200-154293000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr5:154267200-154311800	Strong transcription	Primary B cells from peripheral blood	blood
39	chr5:154267200-154312800	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr5:154267400-154299000	Strong transcription	Fetal Stomach	stomach
41	chr5:154267600-154278800	Strong transcription	Liver	Liver
42	chr5:154267600-154279000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
43	chr5:154267600-154300000	Strong transcription	Fetal Muscle Leg	muscle
44	chr5:154267600-154301600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr5:154267600-154313200	Strong transcription	Duodenum Mucosa	Duodenum
46	chr5:154267800-154315600	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr5:154268000-154282800	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr5:154268000-154283800	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr5:154268000-154296600	Weak transcription	Right Atrium	heart
50	chr5:154268000-154315600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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