Variant report

Variant	rs2544859
Chromosome Location	chr5:154348206-154348207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154236951..154238944-chr5:154345833..154349110,3	MCF-7	breast:
2	chr5:154347106..154348977-chr5:154351843..154353596,2	MCF-7	breast:
3	chr5:154342000..154345250-chr5:154346858..154348980,3	MCF-7	breast:
4	chr5:154346229..154348677-chr5:154350514..154352609,2	K562	blood:

Variant related genes	Relation type
ENSG00000170271	Chromatin interaction
ENSG00000155508	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1035368	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10515727	0.81[AMR][1000 genomes]
rs12187890	0.81[AMR][1000 genomes]
rs12188828	0.93[CEU][hapmap];0.87[YRI][hapmap]
rs12188906	0.82[CHB][hapmap]
rs12300	0.81[CEU][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1421814	0.82[CHB][hapmap]
rs1421819	0.81[AMR][1000 genomes]
rs164195	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116421	0.93[CEU][hapmap];0.89[YRI][hapmap]
rs17116442	0.93[CEU][hapmap];0.86[YRI][hapmap];0.86[EUR][1000 genomes]
rs17116455	0.82[CHB][hapmap]
rs17116489	0.82[CHB][hapmap]
rs17116534	0.93[CEU][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17116638	0.82[CHB][hapmap]
rs180846	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs186971	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1974776	0.93[CEU][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1974777	0.93[CEU][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2042168	0.93[CEU][hapmap];0.97[YRI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2112223	0.93[CEU][hapmap];0.82[CHB][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2161128	0.93[CEU][hapmap];0.97[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2258437	0.87[CEU][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2291780	0.82[CHB][hapmap]
rs2544866	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2544874	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2544875	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2544876	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2544880	0.93[CEU][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2544884	0.93[CEU][hapmap];0.82[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2560063	0.90[EUR][1000 genomes]
rs2644743	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2644744	0.93[CEU][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2644746	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2688186	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688187	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688188	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688189	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688190	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688191	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688193	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2688195	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2688198	0.93[CEU][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688199	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2688200	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688201	0.93[CEU][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688206	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2688208	0.93[CEU][hapmap];0.82[CHB][hapmap];0.97[YRI][hapmap];0.90[EUR][1000 genomes]
rs348739	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs348748	0.93[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs348749	0.82[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs348750	0.93[CEU][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs348751	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs348752	0.93[CEU][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs348754	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs39614	0.93[CEU][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes]
rs4354100	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4958771	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55770418	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61145644	0.83[AMR][1000 genomes]
rs6871813	0.83[AMR][1000 genomes]
rs6879277	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6884416	0.89[EUR][1000 genomes]
rs6895588	0.81[AMR][1000 genomes]
rs702742	0.93[CEU][hapmap];0.89[EUR][1000 genomes]
rs73280705	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73807206	0.81[AMR][1000 genomes]
rs73807213	0.81[AMR][1000 genomes]
rs816717	0.93[CEU][hapmap];0.85[YRI][hapmap];0.84[EUR][1000 genomes]
rs816718	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs816720	0.93[CEU][hapmap];0.96[YRI][hapmap];0.90[EUR][1000 genomes]
rs816722	0.91[EUR][1000 genomes]
rs816743	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs888694	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154321800-154352200	Weak transcription	Right Ventricle	heart
2	chr5:154322000-154350000	Weak transcription	Fetal Brain Male	brain
3	chr5:154322400-154349600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:154322600-154364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:154327600-154351600	Weak transcription	Fetal Heart	heart
6	chr5:154335600-154350600	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr5:154335800-154348400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr5:154335800-154349000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:154336000-154349000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr5:154336000-154349400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr5:154336200-154348800	Strong transcription	Fetal Intestine Large	intestine
12	chr5:154336200-154349000	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr5:154336200-154349400	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr5:154336600-154348800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:154336800-154350600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:154338400-154351800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr5:154339200-154350400	Weak transcription	Esophagus	oesophagus
18	chr5:154339200-154355400	Weak transcription	Gastric	stomach
19	chr5:154339200-154361200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr5:154339400-154350400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:154339400-154355400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr5:154339400-154355400	Weak transcription	Pancreas	Pancrea
23	chr5:154339400-154355600	Weak transcription	Lung	lung
24	chr5:154339600-154349800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr5:154339600-154356200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr5:154340200-154357200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr5:154341400-154366600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr5:154341600-154349600	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr5:154342400-154349400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr5:154342800-154363400	Weak transcription	Brain Germinal Matrix	brain
31	chr5:154343000-154348800	Strong transcription	Primary T cells from cord blood	blood
32	chr5:154343400-154356800	Weak transcription	Hela-S3	cervix
33	chr5:154343600-154349400	Strong transcription	Fetal Muscle Leg	muscle
34	chr5:154344200-154348800	Strong transcription	Fetal Lung	lung
35	chr5:154344800-154356400	Weak transcription	HMEC	breast
36	chr5:154345000-154348800	Strong transcription	Fetal Muscle Trunk	muscle
37	chr5:154345000-154357000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr5:154345200-154348800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr5:154345200-154348800	Strong transcription	Fetal Thymus	thymus
40	chr5:154345200-154349000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr5:154345400-154348400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr5:154345400-154348400	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr5:154345400-154348600	Strong transcription	Primary B cells from peripheral blood	blood
44	chr5:154345400-154349000	Strong transcription	Primary B cells from cord blood	blood
45	chr5:154345400-154349200	Strong transcription	Primary hematopoietic stem cells	blood
46	chr5:154345600-154348600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr5:154345600-154348800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr5:154345600-154348800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr5:154345600-154348800	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr5:154345600-154349000	Strong transcription	Liver	Liver

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