Variant report

Variant	rs2688186
Chromosome Location	chr5:154265587-154265588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154236554..154241107-chr5:154261832..154268242,6	MCF-7	breast:
2	chr5:154236608..154239552-chr5:154265475..154268217,2	K562	blood:
3	chr5:154256944..154260356-chr5:154260971..154266243,8	K562	blood:

Variant related genes	Relation type
ENSG00000170271	Chromatin interaction
ENSG00000155508	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1035368	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11167705	0.84[ASN][1000 genomes]
rs12188828	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12300	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs164195	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17116411	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17116414	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17116421	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17116442	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17116534	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs180846	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs186971	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1974776	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1974777	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2042168	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2112223	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2161128	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2258437	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2396999	0.81[EUR][1000 genomes]
rs2431184	0.92[ASN][1000 genomes]
rs2544859	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2544860	0.84[ASN][1000 genomes]
rs2544866	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2544874	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544875	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544876	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2544880	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544884	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs255529	0.86[ASN][1000 genomes]
rs2560063	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2644743	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2644744	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2644746	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2688187	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688188	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688189	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688190	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688191	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688193	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688194	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2688195	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2688198	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688199	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2688200	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2688201	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2688206	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688208	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs348739	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs348748	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs348749	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs348750	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs348751	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs348752	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs348754	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs39614	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4354100	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs454161	0.92[ASN][1000 genomes]
rs4958771	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55770418	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56374414	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58415346	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59525998	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59749917	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6580122	0.82[ASN][1000 genomes]
rs6873483	0.81[ASN][1000 genomes]
rs6879277	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6884416	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs702742	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73276742	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73280705	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7723269	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7728194	0.82[EUR][1000 genomes]
rs816717	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs816718	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs816720	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs816722	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs816734	0.88[ASN][1000 genomes]
rs816743	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs816747	0.82[ASN][1000 genomes]
rs888694	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs960499	0.82[ASN][1000 genomes]
rs9942412	0.81[EUR][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154248600-154267600	Weak transcription	Right Atrium	heart
2	chr5:154255600-154266000	Weak transcription	NHLF	lung
3	chr5:154256000-154266000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr5:154257000-154266000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr5:154257600-154266000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:154258800-154265600	Weak transcription	Gastric	stomach
7	chr5:154258800-154265800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:154259000-154265800	Weak transcription	Pancreas	Pancrea
9	chr5:154259200-154266000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:154259400-154265800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr5:154259400-154265800	Weak transcription	Colonic Mucosa	Colon
12	chr5:154262000-154268400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:154262000-154268800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
14	chr5:154262200-154265600	Weak transcription	Esophagus	oesophagus
15	chr5:154262800-154268000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:154262800-154300800	Strong transcription	Fetal Brain Female	brain
17	chr5:154263000-154265800	Weak transcription	Left Ventricle	heart
18	chr5:154263800-154266600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
19	chr5:154263800-154267600	ZNF genes & repeats	Primary B cells from cord blood	blood
20	chr5:154263800-154268200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr5:154264000-154266000	Strong transcription	Ovary	ovary
22	chr5:154264000-154266400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr5:154264000-154266400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
24	chr5:154264000-154266400	ZNF genes & repeats	Fetal Intestine Small	intestine
25	chr5:154264000-154266600	ZNF genes & repeats	Thymus	Thymus
26	chr5:154264000-154266800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
27	chr5:154264000-154266800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
28	chr5:154264000-154266800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
29	chr5:154264000-154266800	ZNF genes & repeats	Fetal Lung	lung
30	chr5:154264000-154267600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
31	chr5:154264000-154267600	ZNF genes & repeats	Fetal Muscle Leg	muscle
32	chr5:154264000-154268200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
33	chr5:154264000-154268200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
34	chr5:154264000-154268400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr5:154264000-154268600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
36	chr5:154264000-154272200	Strong transcription	HSMM	muscle
37	chr5:154264000-154276600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr5:154264000-154312800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr5:154264200-154265800	Weak transcription	Placenta	Placenta
40	chr5:154264200-154266200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
41	chr5:154264200-154266400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr5:154264200-154266600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr5:154264200-154266600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
44	chr5:154264200-154266600	ZNF genes & repeats	Fetal Heart	heart
45	chr5:154264200-154266600	ZNF genes & repeats	Dnd41	blood
46	chr5:154264200-154266800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
47	chr5:154264200-154266800	ZNF genes & repeats	HMEC	breast
48	chr5:154264200-154267000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
49	chr5:154264200-154267600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
50	chr5:154264200-154267800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood

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