Variant report

Variant	rs73807213
Chromosome Location	chr5:154345416-154345417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10515727	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12186480	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187572	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12187890	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187921	0.90[EUR][1000 genomes]
rs12187934	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12187974	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188149	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188498	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12188906	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12189508	0.90[EUR][1000 genomes]
rs1421813	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421814	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421815	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421819	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs14922	0.83[ASN][1000 genomes]
rs17096232	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116417	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116433	0.84[EUR][1000 genomes]
rs17116455	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116489	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116638	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116669	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs186971	0.81[AMR][1000 genomes]
rs2112223	0.83[AMR][1000 genomes]
rs2161128	0.80[AMR][1000 genomes]
rs2258437	0.80[AMR][1000 genomes]
rs2291780	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2544859	0.81[AMR][1000 genomes]
rs2544866	0.80[AMR][1000 genomes]
rs2544884	0.80[AMR][1000 genomes]
rs2644744	0.83[AMR][1000 genomes]
rs2644746	0.80[AMR][1000 genomes]
rs28372688	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs348748	0.80[AMR][1000 genomes]
rs348749	0.80[AMR][1000 genomes]
rs348751	0.80[AMR][1000 genomes]
rs348752	0.80[AMR][1000 genomes]
rs348754	0.80[AMR][1000 genomes]
rs3776984	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55692274	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55770418	0.83[AMR][1000 genomes]
rs56773390	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56895891	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61145644	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6580123	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6865950	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6871813	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6895588	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6895702	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73280705	0.80[AMR][1000 genomes]
rs73806917	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73807206	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73807207	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73807216	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73809507	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709899	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7716019	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs888694	0.85[AMR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154321400-154346000	Weak transcription	Colonic Mucosa	Colon
2	chr5:154321600-154345600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:154321800-154352200	Weak transcription	Right Ventricle	heart
4	chr5:154322000-154350000	Weak transcription	Fetal Brain Male	brain
5	chr5:154322400-154349600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:154322600-154364600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:154322800-154346000	Weak transcription	Colon Smooth Muscle	Colon
8	chr5:154327600-154351600	Weak transcription	Fetal Heart	heart
9	chr5:154329600-154345800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr5:154329800-154347200	Weak transcription	Psoas Muscle	Psoas
11	chr5:154330600-154345800	Weak transcription	Small Intestine	intestine
12	chr5:154331000-154346200	Weak transcription	K562	blood
13	chr5:154334800-154347200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr5:154335600-154350600	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr5:154335800-154348000	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr5:154335800-154348400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr5:154335800-154349000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:154336000-154349000	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr5:154336000-154349400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr5:154336200-154348800	Strong transcription	Fetal Intestine Large	intestine
21	chr5:154336200-154349000	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr5:154336200-154349400	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr5:154336600-154348800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:154336800-154345800	Weak transcription	Spleen	Spleen
25	chr5:154336800-154350600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:154337600-154348000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr5:154338400-154351800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr5:154339000-154347800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr5:154339200-154350400	Weak transcription	Esophagus	oesophagus
30	chr5:154339200-154355400	Weak transcription	Gastric	stomach
31	chr5:154339200-154361200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr5:154339400-154345600	Weak transcription	NHLF	lung
33	chr5:154339400-154346000	Weak transcription	Aorta	Aorta
34	chr5:154339400-154350400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr5:154339400-154355400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr5:154339400-154355400	Weak transcription	Pancreas	Pancrea
37	chr5:154339400-154355600	Weak transcription	Lung	lung
38	chr5:154339600-154345600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr5:154339600-154346000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr5:154339600-154346800	Weak transcription	Brain Hippocampus Middle	brain
41	chr5:154339600-154349800	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr5:154339600-154356200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr5:154339800-154346600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr5:154339800-154347200	Weak transcription	Brain Substantia Nigra	brain
45	chr5:154340200-154346000	Weak transcription	Fetal Brain Female	brain
46	chr5:154340200-154346600	Weak transcription	NH-A	brain
47	chr5:154340200-154357200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr5:154340400-154346000	Weak transcription	Ovary	ovary
49	chr5:154340400-154347200	Weak transcription	HSMM	muscle
50	chr5:154341000-154345800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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