Variant report

Variant	rs73806917
Chromosome Location	chr5:154264591-154264592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154236554..154241107-chr5:154261832..154268242,6	MCF-7	breast:
2	chr5:154256944..154260356-chr5:154260971..154266243,8	K562	blood:

Variant related genes	Relation type
ENSG00000155508	Chromatin interaction
ENSG00000170271	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10515727	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12186480	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12186610	0.82[EUR][1000 genomes]
rs12187572	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187890	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12187921	0.97[EUR][1000 genomes]
rs12187934	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12187974	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12188149	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12188498	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12188906	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12189508	0.97[EUR][1000 genomes]
rs1421813	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1421814	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1421815	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1421819	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17096232	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17116409	0.85[EUR][1000 genomes]
rs17116417	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17116433	0.90[EUR][1000 genomes]
rs17116455	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17116489	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17116638	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17116669	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2291780	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28372688	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3776984	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4452598	0.83[EUR][1000 genomes]
rs4626377	0.83[EUR][1000 genomes]
rs55692274	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56773390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56895891	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61145644	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6580123	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6865950	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6871813	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6895588	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6895702	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73807206	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73807207	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73807213	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73807216	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73809507	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7709899	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7716019	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154240600-154264800	Weak transcription	Stomach Mucosa	stomach
2	chr5:154248600-154267600	Weak transcription	Right Atrium	heart
3	chr5:154255600-154266000	Weak transcription	NHLF	lung
4	chr5:154255800-154265000	Weak transcription	Brain Substantia Nigra	brain
5	chr5:154255800-154265200	Weak transcription	Fetal Kidney	kidney
6	chr5:154256000-154264800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr5:154256000-154265200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr5:154256000-154266000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr5:154256800-154264600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr5:154256800-154264800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:154256800-154265000	Weak transcription	K562	blood
12	chr5:154257000-154266000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr5:154257200-154265200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr5:154257600-154266000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr5:154258600-154264600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr5:154258800-154264600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr5:154258800-154264800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr5:154258800-154264800	Weak transcription	NHDF-Ad	bronchial
19	chr5:154258800-154265000	Weak transcription	Brain Angular Gyrus	brain
20	chr5:154258800-154265600	Weak transcription	Gastric	stomach
21	chr5:154258800-154265800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr5:154259000-154264600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr5:154259000-154264600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr5:154259000-154264800	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr5:154259000-154264800	Weak transcription	HepG2	liver
26	chr5:154259000-154265000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr5:154259000-154265000	Weak transcription	Spleen	Spleen
28	chr5:154259000-154265000	Weak transcription	NH-A	brain
29	chr5:154259000-154265200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr5:154259000-154265200	Weak transcription	HSMMtube	muscle
31	chr5:154259000-154265400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr5:154259000-154265400	Weak transcription	Fetal Thymus	thymus
33	chr5:154259000-154265400	Weak transcription	Right Ventricle	heart
34	chr5:154259000-154265800	Weak transcription	Pancreas	Pancrea
35	chr5:154259200-154264600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr5:154259200-154264800	Weak transcription	Brain Hippocampus Middle	brain
37	chr5:154259200-154265000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr5:154259200-154266000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:154259400-154265800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr5:154259400-154265800	Weak transcription	Colonic Mucosa	Colon
41	chr5:154259600-154265000	Strong transcription	Brain Germinal Matrix	brain
42	chr5:154259800-154264600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr5:154259800-154264800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr5:154261000-154264800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr5:154261000-154265000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr5:154262000-154268400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr5:154262000-154268800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
48	chr5:154262200-154264800	Weak transcription	NHEK	skin
49	chr5:154262200-154265600	Weak transcription	Esophagus	oesophagus
50	chr5:154262400-154264600	Weak transcription	Adipose Nuclei	Adipose

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