Variant report

Variant	rs4626377
Chromosome Location	chr5:154119222-154119223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154110340..154114557-chr5:154119062..154122333,4	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12186610	0.83[EUR][1000 genomes]
rs12187572	0.83[EUR][1000 genomes]
rs12187921	0.86[EUR][1000 genomes]
rs12188498	0.89[EUR][1000 genomes]
rs12188906	0.92[EUR][1000 genomes]
rs12189508	0.86[EUR][1000 genomes]
rs17096232	0.86[EUR][1000 genomes]
rs17116409	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17116417	0.89[EUR][1000 genomes]
rs17116433	0.92[EUR][1000 genomes]
rs17116455	0.89[EUR][1000 genomes]
rs17116489	0.86[EUR][1000 genomes]
rs2396999	0.81[ASN][1000 genomes]
rs3776984	0.86[EUR][1000 genomes]
rs4452598	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56773390	0.80[EUR][1000 genomes]
rs73806917	0.83[EUR][1000 genomes]
rs7716019	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021153	chr5:154099869-154147970	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154074200-154120000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:154104000-154120000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr5:154107200-154133200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr5:154109200-154120000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:154109600-154120000	Weak transcription	Liver	Liver
6	chr5:154109600-154120800	Weak transcription	Stomach Mucosa	stomach
7	chr5:154111200-154120400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:154111400-154120200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr5:154112000-154120800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr5:154112200-154123600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:154112600-154120200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:154113000-154120400	Weak transcription	Psoas Muscle	Psoas
13	chr5:154115800-154120400	Weak transcription	Left Ventricle	heart
14	chr5:154116200-154132400	Weak transcription	Fetal Intestine Small	intestine
15	chr5:154117000-154120000	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr5:154117800-154120600	Weak transcription	Gastric	stomach
17	chr5:154117800-154120800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr5:154117800-154123600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr5:154117800-154123600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr5:154117800-154128600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr5:154117800-154133000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr5:154118000-154120400	Weak transcription	Pancreas	Pancrea
23	chr5:154118000-154121000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr5:154118000-154123600	Weak transcription	HepG2	liver
25	chr5:154118000-154133000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr5:154118200-154120200	Weak transcription	Fetal Stomach	stomach
27	chr5:154118400-154120200	Weak transcription	Brain Germinal Matrix	brain
28	chr5:154118600-154120200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr5:154119000-154121600	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr5:154119200-154119600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr5:154119200-154119600	ZNF genes & repeats	Lung	lung
32	chr5:154119200-154121400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr5:154119200-154121400	Enhancers	Adipose Nuclei	Adipose

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