Variant report

Variant	rs12188149
Chromosome Location	chr5:154289753-154289754
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154211040..154212734-chr5:154289687..154291333,2	K562	blood:
2	chr5:154288944..154290584-chr5:154316214..154318295,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082516	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10515727	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12186480	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187572	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12187890	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187921	0.92[EUR][1000 genomes]
rs12187934	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12187974	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188498	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12188906	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12189508	0.92[EUR][1000 genomes]
rs1421813	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421814	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421815	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421819	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs14922	0.83[ASN][1000 genomes]
rs17096232	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116409	0.80[EUR][1000 genomes]
rs17116417	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116433	0.86[EUR][1000 genomes]
rs17116455	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116489	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116638	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116669	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2291780	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688187	0.82[AMR][1000 genomes]
rs28372688	1.00[ASN][1000 genomes]
rs3776984	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55692274	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56773390	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56895891	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61145644	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6580123	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6865950	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6871813	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6895588	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6895702	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73806917	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73807206	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73807207	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73807213	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73807216	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73809507	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709899	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7716019	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154262800-154300800	Strong transcription	Fetal Brain Female	brain
2	chr5:154264000-154312800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:154266200-154312200	Strong transcription	Fetal Thymus	thymus
4	chr5:154266200-154316600	Weak transcription	Stomach Mucosa	stomach
5	chr5:154266400-154293600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:154266400-154311200	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr5:154266400-154312800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr5:154266400-154315600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:154266600-154292600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr5:154266600-154292800	Strong transcription	Left Ventricle	heart
11	chr5:154266600-154293000	Strong transcription	Dnd41	blood
12	chr5:154266600-154293200	Strong transcription	Placenta	Placenta
13	chr5:154266600-154294600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:154266600-154312800	Strong transcription	Fetal Intestine Large	intestine
15	chr5:154266600-154313200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr5:154266600-154313600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:154266800-154293000	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr5:154266800-154293600	Strong transcription	Stomach Smooth Muscle	stomach
19	chr5:154267000-154293600	Strong transcription	Primary T cells from cord blood	blood
20	chr5:154267000-154294400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr5:154267000-154304400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:154267000-154312800	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr5:154267200-154293000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr5:154267200-154311800	Strong transcription	Primary B cells from peripheral blood	blood
25	chr5:154267200-154312800	Strong transcription	H1 Cell Line	embryonic stem cell
26	chr5:154267400-154299000	Strong transcription	Fetal Stomach	stomach
27	chr5:154267600-154300000	Strong transcription	Fetal Muscle Leg	muscle
28	chr5:154267600-154301600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr5:154267600-154313200	Strong transcription	Duodenum Mucosa	Duodenum
30	chr5:154267800-154315600	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr5:154268000-154296600	Weak transcription	Right Atrium	heart
32	chr5:154268000-154315600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:154268200-154300200	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr5:154268200-154315000	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr5:154268200-154315600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr5:154268200-154316200	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr5:154268800-154312800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr5:154269600-154293200	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr5:154269800-154292200	Weak transcription	Fetal Heart	heart
40	chr5:154269800-154313600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr5:154269800-154315400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr5:154269800-154316200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr5:154273600-154316600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr5:154275000-154293000	Strong transcription	Osteobl	bone
45	chr5:154275000-154300800	Strong transcription	Primary B cells from cord blood	blood
46	chr5:154275400-154313400	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr5:154275800-154291400	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr5:154276200-154314600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr5:154277800-154293000	Strong transcription	Brain Inferior Temporal Lobe	brain
50	chr5:154279000-154304400	Strong transcription	Fetal Muscle Trunk	muscle

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