Variant report

Variant	rs32427
Chromosome Location	chr5:154196593-154196594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1035368	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12187921	0.85[CHB][hapmap]
rs12188828	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12300	0.86[JPT][hapmap]
rs17116421	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17116433	0.86[CHB][hapmap]
rs17116442	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17116534	0.86[JPT][hapmap]
rs180846	0.86[CHB][hapmap]
rs1974776	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1974777	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2042168	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2112223	0.86[JPT][hapmap]
rs2161128	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2258437	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2544860	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2544880	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2644743	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2644744	0.86[JPT][hapmap]
rs2688198	0.86[JPT][hapmap]
rs2688201	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2688208	0.86[JPT][hapmap]
rs348739	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs348748	0.86[CHB][hapmap]
rs348749	0.85[CHB][hapmap]
rs348750	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs348752	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs39614	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs702742	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs816717	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs816718	1.00[JPT][hapmap]
rs816720	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs816747	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs960499	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830521	chr5:154147567-154244266	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154167000-154203000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:154169200-154204200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:154169200-154204200	Strong transcription	Dnd41	blood
4	chr5:154169400-154198200	Strong transcription	H9 Cell Line	embryonic stem cell
5	chr5:154169400-154198400	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:154169400-154198800	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:154169400-154199000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr5:154169400-154199400	Strong transcription	Fetal Muscle Trunk	muscle
9	chr5:154169400-154200000	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:154169400-154200800	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr5:154169400-154201400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:154169400-154204000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:154169400-154204200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr5:154169400-154204200	Strong transcription	Duodenum Mucosa	Duodenum
15	chr5:154169400-154205800	Strong transcription	Skeletal Muscle Female	skeletal muscle
16	chr5:154169600-154199400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr5:154169600-154200000	Strong transcription	Fetal Muscle Leg	muscle
18	chr5:154169600-154202400	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr5:154169600-154204200	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr5:154169800-154198200	Strong transcription	Fetal Brain Female	brain
21	chr5:154169800-154198600	Strong transcription	HMEC	breast
22	chr5:154170800-154201200	Strong transcription	Muscle Satellite Cultured Cells	--
23	chr5:154171000-154201000	Strong transcription	HSMM	muscle
24	chr5:154174000-154212200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr5:154174800-154204400	Strong transcription	Placenta	Placenta
26	chr5:154175200-154204400	Strong transcription	Osteobl	bone
27	chr5:154175200-154204600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr5:154177200-154197800	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr5:154177200-154202200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr5:154177400-154196600	Strong transcription	Fetal Lung	lung
31	chr5:154177800-154196600	Strong transcription	Placenta Amnion	Placenta Amnion
32	chr5:154177800-154198400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
33	chr5:154178000-154197200	Strong transcription	Stomach Smooth Muscle	stomach
34	chr5:154178000-154199200	Strong transcription	HSMMtube	muscle
35	chr5:154178200-154204000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr5:154179000-154197800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
37	chr5:154181000-154201000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:154181000-154211600	Strong transcription	Brain Hippocampus Middle	brain
39	chr5:154181200-154204800	Strong transcription	Brain Cingulate Gyrus	brain
40	chr5:154181400-154197400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr5:154181400-154199800	Strong transcription	Brain Inferior Temporal Lobe	brain
42	chr5:154181600-154197400	Strong transcription	NH-A	brain
43	chr5:154181800-154198200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr5:154182000-154211400	Strong transcription	Left Ventricle	heart
45	chr5:154182200-154198400	Weak transcription	Right Atrium	heart
46	chr5:154187000-154197800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr5:154187000-154211400	Strong transcription	Fetal Stomach	stomach
48	chr5:154187600-154204200	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr5:154187600-154204400	Strong transcription	Brain Germinal Matrix	brain
50	chr5:154188600-154202400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links