Variant report

Variant	rs2047305
Chromosome Location	chr5:154313248-154313249
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154178549..154181135-chr5:154311775..154314598,2	K562	blood:
2	chr5:154307865..154310770-chr5:154311622..154314495,2	MCF-7	breast:

rs_ID	r²[population]
rs10515727	1.00[JPT][hapmap]
rs12188498	1.00[JPT][hapmap]
rs12188906	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1421814	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1421815	1.00[JPT][hapmap]
rs1421819	1.00[JPT][hapmap]
rs17096232	1.00[JPT][hapmap]
rs17116417	1.00[JPT][hapmap]
rs17116455	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17116489	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17116638	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17116707	1.00[JPT][hapmap]
rs2112223	0.82[CHB][hapmap]
rs2291780	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2453754	0.82[CEU][hapmap]
rs2688208	0.82[CHB][hapmap]
rs3776984	1.00[JPT][hapmap]
rs6895741	1.00[JPT][hapmap]
rs7716019	1.00[JPT][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs2047305	LARP1	cis	Whole Blood	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154266200-154316600	Weak transcription	Stomach Mucosa	stomach
2	chr5:154266400-154315600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:154266600-154313600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:154267800-154315600	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr5:154268000-154315600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:154268200-154315000	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:154268200-154315600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr5:154268200-154316200	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:154269800-154313600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr5:154269800-154315400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:154269800-154316200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:154273600-154316600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:154275400-154313400	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr5:154276200-154314600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:154283200-154316600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr5:154291600-154316600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:154292600-154316200	Weak transcription	Fetal Heart	heart
18	chr5:154294000-154315400	Strong transcription	Adipose Nuclei	Adipose
19	chr5:154294000-154315800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr5:154294200-154314800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr5:154294400-154315200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr5:154301800-154314200	Strong transcription	Fetal Stomach	stomach
23	chr5:154302600-154315400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr5:154302800-154313400	Strong transcription	K562	blood
25	chr5:154303000-154313400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr5:154304000-154316400	Weak transcription	Small Intestine	intestine
27	chr5:154304200-154316200	Weak transcription	NHLF	lung
28	chr5:154305200-154315400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr5:154305800-154317000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr5:154306400-154316200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr5:154306600-154313400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr5:154306800-154316600	Weak transcription	Pancreas	Pancrea
33	chr5:154307000-154316200	Weak transcription	NHDF-Ad	bronchial
34	chr5:154307200-154316600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr5:154307200-154316600	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr5:154307400-154316400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr5:154307400-154316600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr5:154307400-154316600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr5:154307400-154316600	Weak transcription	Esophagus	oesophagus
40	chr5:154307400-154316600	Weak transcription	Gastric	stomach
41	chr5:154307600-154313600	Weak transcription	Fetal Intestine Small	intestine
42	chr5:154307600-154314400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr5:154308400-154315600	Weak transcription	Fetal Brain Male	brain
44	chr5:154309400-154316200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr5:154310000-154316600	Weak transcription	Thymus	Thymus
46	chr5:154310200-154314200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr5:154310400-154316400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr5:154310400-154316600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr5:154310600-154313600	Strong transcription	Primary B cells from cord blood	blood
50	chr5:154310600-154314800	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links