Variant report

Variant	rs716664
Chromosome Location	chr5:154447154-154447155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17116707	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs17116724	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17116762	0.86[AFR][1000 genomes]
rs6580132	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6859994	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6865458	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6875932	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7718551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7736342	0.80[ASN][1000 genomes]
rs7736564	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9324799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023588	chr5:154415586-154464455	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154445800-154447400	Enhancers	GM12878-XiMat	blood
2	chr5:154446000-154447600	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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