Variant report

Variant	rs1711745
Chromosome Location	chr9:115452909-115452910
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:115446137..115448834-chr9:115451791..115453700,3	K562	blood:
2	chr9:115452851..115454387-chr9:115511339..115512880,2	K562	blood:
3	chr9:115446137..115448834-chr9:115451876..115453700,2	K562	blood:

Variant related genes	Relation type
ENSG00000226609	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10124260	0.82[CEU][hapmap]
rs10733594	0.82[CEU][hapmap]
rs10739373	0.82[CEU][hapmap]
rs10759583	0.99[ASN][1000 genomes]
rs10817370	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10817374	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10981483	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10981484	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11794604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1361720	0.82[CEU][hapmap]
rs1418409	0.82[CEU][hapmap]
rs1418410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1539338	0.82[CEU][hapmap]
rs1693411	0.88[EUR][1000 genomes]
rs1711739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1711744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1711746	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1711747	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1891402	0.82[CEU][hapmap]
rs1891403	0.82[CEU][hapmap]
rs2153837	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2173195	0.99[ASN][1000 genomes]
rs2185768	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2185769	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2645993	0.82[CEU][hapmap]
rs2645994	1.00[CEU][hapmap]
rs2796028	0.82[CEU][hapmap]
rs2798316	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2995805	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4246892	0.82[CEU][hapmap]
rs4304397	0.82[CEU][hapmap]
rs4978507	0.82[CEU][hapmap]
rs4979153	0.82[CEU][hapmap]
rs4979154	0.82[CEU][hapmap]
rs4979157	0.82[CEU][hapmap]
rs4979165	0.82[CEU][hapmap]
rs6477959	0.82[CEU][hapmap]
rs700122	0.82[CEU][hapmap]
rs7030795	0.82[CEU][hapmap]
rs7859175	0.82[CEU][hapmap]
rs7868830	0.82[CEU][hapmap]
rs786961	1.00[CEU][hapmap]
rs786965	0.84[EUR][1000 genomes]
rs786966	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs786967	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs786968	0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs786969	0.82[EUR][1000 genomes]
rs786972	0.82[EUR][1000 genomes]
rs786977	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs786978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs786979	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs786981	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs786983	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs787271	0.82[CEU][hapmap]
rs787276	0.82[CEU][hapmap]
rs787278	1.00[CEU][hapmap]
rs787280	0.82[CEU][hapmap]
rs787284	0.82[CEU][hapmap]
rs787287	0.82[CEU][hapmap]
rs787294	0.82[CEU][hapmap]
rs787295	0.82[CEU][hapmap]
rs787297	0.82[CEU][hapmap]
rs787298	0.82[CEU][hapmap]
rs787299	0.82[CEU][hapmap]
rs787301	0.82[CEU][hapmap]
rs787302	0.82[CEU][hapmap]
rs813101	0.82[CEU][hapmap]
rs885387	0.82[CEU][hapmap]
rs9409123	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv515899	chr9:115359049-115593870	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv34346	chr9:115360505-115581453	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1038999	chr9:115367078-115590950	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	esv2757350	chr9:115371397-115594108	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv471317	chr9:115375153-115558246	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	esv2761275	chr9:115376461-115590962	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv1035169	chr9:115378282-115573581	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv1049451	chr9:115378282-115585109	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv1047374	chr9:115378282-115590950	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv1038306	chr9:115379305-115595695	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
13	nsv540194	chr9:115379305-115595695	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
14	nsv1051909	chr9:115379505-115588377	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
15	nsv540195	chr9:115379505-115588377	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
16	nsv915763	chr9:115379600-115588349	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
17	esv3693040	chr9:115381164-115578065	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
18	nsv515121	chr9:115383227-115585827	Genic enhancers Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
19	nsv1044168	chr9:115383253-115585109	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
20	nsv1048327	chr9:115383253-115589646	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
21	nsv1044381	chr9:115383253-115590950	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
22	nsv442163	chr9:115383255-115590578	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
23	esv35051	chr9:115383332-115573581	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
24	esv34763	chr9:115383332-115581453	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
25	nsv430090	chr9:115383445-115594445	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
26	nsv1041424	chr9:115389428-115590950	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
27	nsv1050186	chr9:115390759-115550453	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
28	nsv1047625	chr9:115390759-115587347	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
29	nsv540196	chr9:115390759-115587347	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
30	nsv615198	chr9:115397206-115589251	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
31	nsv893733	chr9:115397206-115712068	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
32	nsv1051808	chr9:115397891-115590950	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
33	esv34739	chr9:115409445-115581453	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115422200-115479800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:115443800-115459000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:115444000-115479800	Weak transcription	Small Intestine	intestine
4	chr9:115444800-115453000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr9:115445200-115479200	Weak transcription	Colon Smooth Muscle	Colon
6	chr9:115445600-115476600	Weak transcription	Fetal Brain Male	brain
7	chr9:115445800-115460400	Strong transcription	Primary T cells from cord blood	blood
8	chr9:115446000-115453000	Weak transcription	Hela-S3	cervix
9	chr9:115446400-115479400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr9:115446600-115462400	Weak transcription	Fetal Heart	heart
11	chr9:115446600-115479400	Weak transcription	Psoas Muscle	Psoas
12	chr9:115446800-115456000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr9:115447000-115454600	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr9:115447000-115456000	Strong transcription	Adipose Nuclei	Adipose
15	chr9:115447000-115457000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:115447000-115464400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:115447200-115455800	Strong transcription	Duodenum Mucosa	Duodenum
18	chr9:115447200-115456600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr9:115447200-115457200	Strong transcription	Primary B cells from cord blood	blood
20	chr9:115447200-115460000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr9:115447200-115461000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:115447200-115468400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr9:115447400-115454600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr9:115447400-115456000	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr9:115447400-115456400	Strong transcription	Left Ventricle	heart
26	chr9:115447400-115458400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr9:115447600-115453800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:115447600-115456000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr9:115447600-115456200	Strong transcription	Liver	Liver
30	chr9:115447800-115453400	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr9:115447800-115455600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr9:115447800-115456200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr9:115447800-115456600	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr9:115447800-115459800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr9:115448000-115455200	Strong transcription	GM12878-XiMat	blood
36	chr9:115448000-115455800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr9:115448000-115455800	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr9:115448000-115457400	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr9:115448000-115457400	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr9:115448000-115479200	Weak transcription	NHLF	lung
41	chr9:115448200-115455400	Weak transcription	NH-A	brain
42	chr9:115448200-115456800	Strong transcription	Fetal Thymus	thymus
43	chr9:115448600-115455400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr9:115449000-115453400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr9:115449000-115454600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr9:115449000-115457400	Strong transcription	Primary B cells from peripheral blood	blood
47	chr9:115449200-115453600	Strong transcription	Primary hematopoietic stem cells	blood
48	chr9:115449200-115455400	Strong transcription	HSMM	muscle
49	chr9:115449200-115456000	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr9:115449200-115457800	Strong transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links