Variant report

Variant	rs17119558
Chromosome Location	chr14:84509946-84509947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11159616	0.82[JPT][hapmap]
rs12433667	0.87[ASN][1000 genomes]
rs12586479	0.87[ASN][1000 genomes]
rs12586849	1.00[ASN][1000 genomes]
rs12587115	0.82[ASN][1000 genomes]
rs12588733	0.87[ASN][1000 genomes]
rs12588936	0.87[ASN][1000 genomes]
rs12589845	0.87[ASN][1000 genomes]
rs12590706	0.87[ASN][1000 genomes]
rs12898147	0.87[ASN][1000 genomes]
rs17119417	0.87[ASN][1000 genomes]
rs17119488	0.87[ASN][1000 genomes]
rs17119542	0.90[ASN][1000 genomes]
rs1986658	0.82[ASN][1000 genomes]
rs4904150	0.82[ASN][1000 genomes]
rs4904154	0.90[ASN][1000 genomes]
rs58445096	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72701041	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74069027	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1382	chr14:84487547-84532237	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84508200-84510400	Enhancers	Fetal Heart	heart
2	chr14:84509000-84510000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:84509400-84510000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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