Variant report

Variant	rs17121427
Chromosome Location	chr10:91191280-91191281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IFIT5-1	chr10:91190696-91191971	NONHSAT015512

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10887951	0.92[CHD][hapmap]
rs10887952	0.92[CHD][hapmap]
rs10887954	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10887955	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10887956	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11203111	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11203113	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11203120	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11203124	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11498636	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17121329	0.88[EUR][1000 genomes]
rs17122436	1.00[MEX][hapmap]
rs7075004	0.92[CHD][hapmap]
rs7083630	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7095488	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[CHD][hapmap];0.92[GIH][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7096890	0.92[CHD][hapmap]
rs74146950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91175600-91191800	Weak transcription	Psoas Muscle	Psoas
2	chr10:91175600-91191800	Weak transcription	Hela-S3	cervix
3	chr10:91178200-91191800	Weak transcription	Aorta	Aorta
4	chr10:91178200-91197600	Weak transcription	Pancreas	Pancrea
5	chr10:91178400-91191600	Weak transcription	A549	lung
6	chr10:91179600-91225600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:91181200-91192800	Weak transcription	Left Ventricle	heart
8	chr10:91182200-91191400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:91187800-91192400	Weak transcription	HUVEC	blood vessel
10	chr10:91188200-91191800	Weak transcription	Right Ventricle	heart
11	chr10:91188400-91191400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:91188400-91191400	Weak transcription	NH-A	brain
13	chr10:91188400-91191600	Weak transcription	Osteobl	bone
14	chr10:91188400-91191800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:91188600-91194400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr10:91188800-91191800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:91189000-91191400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:91189000-91191400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:91189000-91191400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:91189000-91191400	Weak transcription	HMEC	breast
21	chr10:91189000-91191800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:91189000-91194000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:91189000-91194400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:91189200-91191600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr10:91189200-91191600	Weak transcription	HSMMtube	muscle
26	chr10:91189200-91192800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:91189800-91194400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr10:91191200-91191600	Active TSS	Sigmoid Colon	Sigmoid Colon
29	chr10:91191200-91192400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:91191200-91192400	Enhancers	HSMM	muscle
31	chr10:91191200-91192400	Enhancers	NHEK	skin
32	chr10:91191200-91192600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:91191200-91193600	Enhancers	Fetal Heart	heart

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