Variant report

Variant	rs10887955
Chromosome Location	chr10:91166555-91166556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10887951	0.87[ASN][1000 genomes]
rs10887952	0.87[ASN][1000 genomes]
rs10887954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887956	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203113	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203120	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11203124	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11498636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17121427	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1819443	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2863759	0.87[ASN][1000 genomes]
rs59350558	0.87[ASN][1000 genomes]
rs6586192	0.87[ASN][1000 genomes]
rs7075004	0.87[ASN][1000 genomes]
rs7083630	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095488	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096890	0.87[ASN][1000 genomes]
rs74146950	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7897602	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv819719	chr10:91165763-91174600	Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91152800-91173600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:91152800-91174000	Weak transcription	Gastric	stomach
3	chr10:91153200-91173600	Weak transcription	Brain Germinal Matrix	brain
4	chr10:91153400-91172400	Weak transcription	Thymus	Thymus
5	chr10:91153600-91173600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:91154000-91166800	Weak transcription	Right Ventricle	heart
7	chr10:91154200-91172400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr10:91154200-91173200	Weak transcription	Primary B cells from cord blood	blood
9	chr10:91154200-91173400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:91154200-91173400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr10:91154600-91173000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr10:91155200-91173200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr10:91155400-91172800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr10:91155400-91173600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr10:91156400-91172400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr10:91156400-91174000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:91158400-91168600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr10:91158400-91169600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:91159600-91171800	Weak transcription	Fetal Intestine Small	intestine
20	chr10:91161600-91173600	Weak transcription	Fetal Brain Female	brain
21	chr10:91162400-91173600	Weak transcription	HSMMtube	muscle
22	chr10:91162600-91172400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr10:91162800-91170400	Weak transcription	HSMM	muscle
24	chr10:91162800-91173400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr10:91162800-91173400	Weak transcription	Colon Smooth Muscle	Colon
26	chr10:91162800-91173600	Weak transcription	Aorta	Aorta
27	chr10:91162800-91173800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:91163000-91173600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:91163000-91173600	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr10:91163000-91173800	Weak transcription	Psoas Muscle	Psoas
31	chr10:91163400-91172200	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr10:91163400-91172600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr10:91163400-91173200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr10:91163400-91173400	Weak transcription	Left Ventricle	heart
35	chr10:91163600-91172200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr10:91163600-91173400	Weak transcription	Hela-S3	cervix
37	chr10:91163800-91173200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr10:91164200-91172400	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr10:91164200-91172600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr10:91164200-91173400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:91164200-91173400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr10:91164200-91173600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr10:91164200-91173600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr10:91164400-91166800	Weak transcription	Brain Cingulate Gyrus	brain
45	chr10:91164400-91172200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr10:91164400-91172400	Weak transcription	Primary T cells from cord blood	blood
47	chr10:91164400-91173400	Weak transcription	Brain Anterior Caudate	brain
48	chr10:91164400-91173600	Weak transcription	Stomach Mucosa	stomach
49	chr10:91164600-91168200	Weak transcription	Liver	Liver
50	chr10:91164600-91172000	Weak transcription	Fetal Lung	lung

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