Variant report

Variant	rs11203113
Chromosome Location	chr10:91172684-91172685
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91172637..91174188-chr10:91459994..91461922,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138182	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10887951	0.87[ASN][1000 genomes]
rs10887952	0.87[ASN][1000 genomes]
rs10887954	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887955	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887956	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203111	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11203120	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11203124	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11498636	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17121427	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1819443	0.80[ASN][1000 genomes]
rs2863759	0.87[ASN][1000 genomes]
rs59350558	0.87[ASN][1000 genomes]
rs6586192	0.87[ASN][1000 genomes]
rs7075004	0.87[ASN][1000 genomes]
rs7083630	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095488	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096890	0.87[ASN][1000 genomes]
rs74146950	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7897602	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv819719	chr10:91165763-91174600	Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91152800-91173600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:91152800-91174000	Weak transcription	Gastric	stomach
3	chr10:91153200-91173600	Weak transcription	Brain Germinal Matrix	brain
4	chr10:91153600-91173600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:91154200-91173200	Weak transcription	Primary B cells from cord blood	blood
6	chr10:91154200-91173400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:91154200-91173400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:91154600-91173000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr10:91155200-91173200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr10:91155400-91172800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:91155400-91173600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr10:91156400-91174000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:91161600-91173600	Weak transcription	Fetal Brain Female	brain
14	chr10:91162400-91173600	Weak transcription	HSMMtube	muscle
15	chr10:91162800-91173400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:91162800-91173400	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:91162800-91173600	Weak transcription	Aorta	Aorta
18	chr10:91162800-91173800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr10:91163000-91173600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:91163000-91173600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr10:91163000-91173800	Weak transcription	Psoas Muscle	Psoas
22	chr10:91163400-91173200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:91163400-91173400	Weak transcription	Left Ventricle	heart
24	chr10:91163600-91173400	Weak transcription	Hela-S3	cervix
25	chr10:91163800-91173200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:91164200-91173400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:91164200-91173400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr10:91164200-91173600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr10:91164200-91173600	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr10:91164400-91173400	Weak transcription	Brain Anterior Caudate	brain
31	chr10:91164400-91173600	Weak transcription	Stomach Mucosa	stomach
32	chr10:91164600-91173200	Weak transcription	Primary B cells from peripheral blood	blood
33	chr10:91164600-91173600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr10:91164600-91173600	Weak transcription	Adipose Nuclei	Adipose
35	chr10:91164600-91173600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr10:91164600-91173600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr10:91164600-91173600	Weak transcription	Fetal Muscle Trunk	muscle
38	chr10:91164600-91173600	Weak transcription	NHLF	lung
39	chr10:91164600-91173800	Weak transcription	Ovary	ovary
40	chr10:91164600-91174000	Weak transcription	Lung	lung
41	chr10:91164600-91174000	Weak transcription	Pancreas	Pancrea
42	chr10:91164800-91173200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr10:91164800-91173400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:91165000-91173400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr10:91165000-91173400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr10:91165000-91173600	Weak transcription	Brain Substantia Nigra	brain
47	chr10:91165600-91173200	Weak transcription	Brain Hippocampus Middle	brain
48	chr10:91166200-91173600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr10:91166400-91173200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr10:91167000-91173000	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links