Variant report

Variant	rs59350558
Chromosome Location	chr10:91145369-91145370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10887951	1.00[ASN][1000 genomes]
rs10887952	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887954	0.87[ASN][1000 genomes]
rs10887955	0.87[ASN][1000 genomes]
rs10887956	0.87[ASN][1000 genomes]
rs11203111	0.87[ASN][1000 genomes]
rs11203113	0.87[ASN][1000 genomes]
rs11203120	0.85[ASN][1000 genomes]
rs11498636	0.87[ASN][1000 genomes]
rs1819443	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2863759	1.00[ASN][1000 genomes]
rs6586192	1.00[ASN][1000 genomes]
rs7075004	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7083630	0.87[ASN][1000 genomes]
rs7095488	0.87[ASN][1000 genomes]
rs7096890	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897602	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91135000-91150200	Weak transcription	Fetal Brain Male	brain
2	chr10:91141000-91150000	Weak transcription	Fetal Heart	heart
3	chr10:91143400-91146000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:91143400-91146400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:91143800-91145600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr10:91144000-91145600	Enhancers	Primary B cells from peripheral blood	blood
7	chr10:91144400-91145400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:91144600-91145400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:91144600-91145400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:91144600-91145600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr10:91144800-91145400	Enhancers	GM12878-XiMat	blood
12	chr10:91144800-91145600	Enhancers	Primary B cells from cord blood	blood
13	chr10:91144800-91146600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr10:91144800-91146600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr10:91145000-91145600	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr10:91145200-91145600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr10:91145200-91146200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:91145200-91146200	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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