Variant report

Variant	rs7897602
Chromosome Location	chr10:91150689-91150690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr10:91150205-91150907	PBDE	blood:	n/a	chr10:91150354-91150364 chr10:91150348-91150369

Variant related genes	Relation type
IFIT1	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10887951	1.00[ASN][1000 genomes]
rs10887952	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887954	0.87[ASN][1000 genomes]
rs10887955	0.87[ASN][1000 genomes]
rs10887956	0.87[ASN][1000 genomes]
rs11203111	0.87[ASN][1000 genomes]
rs11203113	0.87[ASN][1000 genomes]
rs11203120	0.85[ASN][1000 genomes]
rs11498636	0.87[ASN][1000 genomes]
rs1819443	0.93[ASN][1000 genomes]
rs2863759	1.00[ASN][1000 genomes]
rs304498	0.80[AFR][1000 genomes]
rs59350558	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586192	1.00[ASN][1000 genomes]
rs7075004	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7083630	0.87[ASN][1000 genomes]
rs7095488	0.87[ASN][1000 genomes]
rs7096890	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91145400-91151000	Weak transcription	GM12878-XiMat	blood
2	chr10:91145400-91151800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:91145600-91151600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:91145800-91151600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr10:91146000-91151400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:91146200-91151400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:91146200-91151800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:91146200-91152400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:91146400-91151600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:91146600-91152000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:91146800-91151800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:91148000-91151600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr10:91148600-91151600	Weak transcription	A549	lung
14	chr10:91149200-91151000	Enhancers	Brain Hippocampus Middle	brain
15	chr10:91149200-91151600	Weak transcription	NHDF-Ad	bronchial
16	chr10:91149200-91151800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr10:91149200-91151800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:91149400-91151800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr10:91149600-91151600	Enhancers	Fetal Muscle Leg	muscle
20	chr10:91150000-91151400	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr10:91150000-91151600	Enhancers	Rectal Smooth Muscle	rectum
22	chr10:91150000-91151800	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr10:91150000-91151800	Enhancers	Fetal Heart	heart
24	chr10:91150200-91150800	Enhancers	Fetal Brain Male	brain
25	chr10:91150200-91151000	Enhancers	Brain Cingulate Gyrus	brain
26	chr10:91150200-91151200	Enhancers	Fetal Lung	lung
27	chr10:91150200-91151600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:91150200-91151600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr10:91150200-91151600	Enhancers	Colon Smooth Muscle	Colon
30	chr10:91150200-91151600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr10:91150400-91150800	Enhancers	Brain Anterior Caudate	brain
32	chr10:91150400-91150800	Enhancers	Brain Substantia Nigra	brain
33	chr10:91150400-91151000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr10:91150400-91151000	Enhancers	Brain Germinal Matrix	brain
35	chr10:91150400-91151000	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr10:91150400-91151200	Enhancers	Right Ventricle	heart
37	chr10:91150400-91151600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:91150400-91151600	Enhancers	Stomach Smooth Muscle	stomach
39	chr10:91150400-91151800	Enhancers	Left Ventricle	heart
40	chr10:91150400-91152800	Enhancers	Small Intestine	intestine
41	chr10:91150600-91150800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:91150600-91150800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:91150600-91150800	Enhancers	Adipose Nuclei	Adipose
44	chr10:91150600-91150800	Enhancers	HepG2	liver
45	chr10:91150600-91151000	Enhancers	Duodenum Mucosa	Duodenum
46	chr10:91150600-91151400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr10:91150600-91151600	Enhancers	Liver	Liver
48	chr10:91150600-91151600	Weak transcription	Brain Angular Gyrus	brain
49	chr10:91150600-91151600	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr10:91150600-91151800	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links