Variant report

Variant	rs17121603
Chromosome Location	chr1:61568505-61568506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61550500..61552522-chr1:61567792..61569935,2	MCF-7	breast:
2	chr1:61563289..61566270-chr1:61566555..61569586,4	K562	blood:
3	chr1:61567279..61569762-chr1:61586131..61588682,2	K562	blood:
4	chr1:61546229..61553202-chr1:61567332..61574812,14	K562	blood:

Variant related genes	Relation type
ENSG00000162599	Chromatin interaction
ENSG00000263380	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1013708	0.89[YRI][hapmap]
rs10493301	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17121608	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17121620	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17121624	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56674609	1.00[EUR][1000 genomes]
rs59792379	1.00[EUR][1000 genomes]
rs60479049	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74086439	0.98[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs74086441	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9804149	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61554600-61581200	Weak transcription	Esophagus	oesophagus
2	chr1:61556200-61569600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:61556600-61573200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr1:61558600-61581200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:61558600-61586000	Weak transcription	Fetal Intestine Small	intestine
6	chr1:61559000-61582000	Weak transcription	Hela-S3	cervix
7	chr1:61559600-61569800	Weak transcription	K562	blood
8	chr1:61560400-61575800	Weak transcription	Fetal Stomach	stomach
9	chr1:61561400-61576200	Weak transcription	HUVEC	blood vessel
10	chr1:61563600-61586000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:61563800-61585600	Weak transcription	NHEK	skin
12	chr1:61563800-61585800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:61564200-61569600	Weak transcription	Fetal Heart	heart
14	chr1:61564400-61587400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:61565200-61574200	Weak transcription	HepG2	liver
16	chr1:61566000-61576000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:61566200-61569000	Weak transcription	Spleen	Spleen
18	chr1:61567000-61579000	Weak transcription	Left Ventricle	heart
19	chr1:61567400-61568600	Active TSS	Fetal Brain Female	brain
20	chr1:61567600-61569000	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr1:61567600-61569800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr1:61567600-61581200	Weak transcription	Ovary	ovary
23	chr1:61567600-61582000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr1:61567800-61568600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:61567800-61569200	Enhancers	Adipose Nuclei	Adipose
26	chr1:61567800-61569200	Weak transcription	Aorta	Aorta
27	chr1:61567800-61569400	Enhancers	Colon Smooth Muscle	Colon
28	chr1:61567800-61571800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr1:61567800-61571800	Enhancers	Brain Substantia Nigra	brain
30	chr1:61568000-61568600	Weak transcription	Brain Angular Gyrus	brain
31	chr1:61568000-61568600	Weak transcription	Brain Anterior Caudate	brain
32	chr1:61568000-61568600	Weak transcription	Brain Germinal Matrix	brain
33	chr1:61568000-61568600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr1:61568000-61568600	Weak transcription	Right Atrium	heart
35	chr1:61568000-61569000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr1:61568000-61569800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr1:61568000-61570400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr1:61568000-61570400	Enhancers	Brain Cingulate Gyrus	brain
39	chr1:61568000-61570600	Weak transcription	Psoas Muscle	Psoas
40	chr1:61568000-61570800	Enhancers	Fetal Brain Male	brain
41	chr1:61568000-61571600	Enhancers	Brain Hippocampus Middle	brain
42	chr1:61568000-61580000	Weak transcription	A549	lung
43	chr1:61568200-61568600	Weak transcription	Fetal Lung	lung
44	chr1:61568200-61569000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr1:61568400-61568600	Enhancers	Fetal Muscle Leg	muscle
46	chr1:61568400-61568600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr1:61568400-61569200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr1:61568400-61569200	Enhancers	Stomach Mucosa	stomach
49	chr1:61568400-61569400	Enhancers	Rectal Smooth Muscle	rectum
50	chr1:61568400-61570400	Enhancers	Duodenum Smooth Muscle	Duodenum

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