Variant report

Variant	rs60479049
Chromosome Location	chr1:61599542-61599543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61588911..61591027-chr1:61598521..61600054,2	K562	blood:
2	chr1:61592937..61594569-chr1:61597659..61600079,2	K562	blood:
3	chr1:61599335..61602150-chr1:61604972..61607069,2	MCF-7	breast:
4	chr1:61598222..61600902-chr1:61603956..61606855,3	K562	blood:
5	chr1:61584347..61588308-chr1:61598128..61600644,3	K562	blood:
6	chr1:61599402..61604405-chr1:61604981..61606872,4	K562	blood:
7	chr1:61520693..61524394-chr1:61599232..61603090,3	K562	blood:

Variant related genes	Relation type
ENSG00000270742	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10493301	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17121603	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17121608	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17121620	1.00[EUR][1000 genomes]
rs17121624	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17121688	1.00[AMR][1000 genomes]
rs17121728	1.00[AMR][1000 genomes]
rs56674609	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59792379	1.00[EUR][1000 genomes]
rs74086439	0.90[ASN][1000 genomes]
rs74086441	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9804149	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61581400-61604600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:61582400-61604800	Weak transcription	Hela-S3	cervix
3	chr1:61587000-61606800	Weak transcription	Fetal Intestine Large	intestine
4	chr1:61591800-61604600	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:61594200-61603800	Weak transcription	Left Ventricle	heart
6	chr1:61595400-61600200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr1:61597000-61599600	Enhancers	Brain Substantia Nigra	brain
8	chr1:61597000-61599600	Enhancers	Fetal Stomach	stomach
9	chr1:61597000-61600000	Enhancers	HepG2	liver
10	chr1:61597800-61600000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:61598000-61604600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:61598200-61601000	Weak transcription	Psoas Muscle	Psoas
13	chr1:61598200-61604000	Weak transcription	NHEK	skin
14	chr1:61598200-61604800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:61598400-61604600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr1:61598400-61604800	Weak transcription	Adipose Nuclei	Adipose
17	chr1:61598600-61600200	Enhancers	Colon Smooth Muscle	Colon
18	chr1:61598600-61601200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:61598600-61604800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr1:61598600-61604800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr1:61598600-61604800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr1:61598600-61605000	Weak transcription	Brain Angular Gyrus	brain
23	chr1:61598600-61605000	Weak transcription	NHDF-Ad	bronchial
24	chr1:61598600-61605200	Weak transcription	Right Ventricle	heart
25	chr1:61598800-61599600	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr1:61598800-61600000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr1:61598800-61600200	Enhancers	Brain Hippocampus Middle	brain
28	chr1:61598800-61601400	Weak transcription	K562	blood
29	chr1:61598800-61604800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr1:61598800-61604800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:61598800-61605000	Weak transcription	Right Atrium	heart
32	chr1:61598800-61605200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr1:61598800-61605600	Weak transcription	Fetal Intestine Small	intestine
34	chr1:61599000-61601600	Weak transcription	Fetal Heart	heart
35	chr1:61599000-61604600	Weak transcription	Liver	Liver
36	chr1:61599000-61605000	Weak transcription	Brain Germinal Matrix	brain
37	chr1:61599000-61606200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr1:61599200-61599600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr1:61599200-61599600	Enhancers	Brain Cingulate Gyrus	brain
40	chr1:61599200-61599600	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr1:61599200-61600000	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr1:61599200-61600200	Weak transcription	Fetal Kidney	kidney
43	chr1:61599200-61602200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr1:61599400-61600000	Enhancers	Fetal Brain Male	brain
45	chr1:61599400-61600200	Enhancers	A549	lung
46	chr1:61599400-61601600	Weak transcription	Brain Anterior Caudate	brain
47	chr1:61599400-61601600	Weak transcription	Fetal Brain Female	brain
48	chr1:61599400-61603800	Weak transcription	Aorta	Aorta
49	chr1:61599400-61604800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr1:61599400-61604800	Weak transcription	HUVEC	blood vessel

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