The 2.0 version of rSNPBase

Variant report

Variant rs74086439
Chromosome Location chr1:61555681-61555682
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:61549400-61558400 Weak transcription Spleen Spleen
2 chr1:61549800-61556000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
3 chr1:61549800-61556200 Weak transcription Primary T helper naive cells fromperipheralblood blood
4 chr1:61549800-61559400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr1:61550200-61556600 Weak transcription Placenta Placenta
6 chr1:61550200-61558000 Weak transcription Stomach Mucosa stomach
7 chr1:61550200-61559400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
8 chr1:61550400-61558000 Weak transcription Small Intestine intestine
9 chr1:61550400-61560000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
10 chr1:61550600-61561000 Weak transcription Colonic Mucosa Colon
11 chr1:61550800-61557800 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr1:61550800-61559600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
13 chr1:61552000-61556200 Weak transcription NHEK skin
14 chr1:61552200-61558000 Weak transcription Pancreatic Islets Pancreatic Islet
15 chr1:61553600-61556200 Weak transcription Rectal Smooth Muscle rectum
16 chr1:61553800-61556400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr1:61553800-61556800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr1:61554000-61555800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr1:61554000-61555800 Flanking Active TSS Cortex derived primary cultured neurospheres brain
20 chr1:61554000-61555800 Genic enhancers Liver Liver
21 chr1:61554000-61556400 Genic enhancers Fetal Lung lung
22 chr1:61554000-61556400 Strong transcription HUVEC blood vessel
23 chr1:61554000-61556600 Strong transcription Fetal Muscle Trunk muscle
24 chr1:61554000-61557400 Strong transcription K562 blood
25 chr1:61554400-61556400 Transcr. at gene 5' and 3' Fetal Brain Male brain
26 chr1:61554400-61559400 Weak transcription Osteobl bone
27 chr1:61554600-61556000 Active TSS Skeletal Muscle Female skeletal muscle
28 chr1:61554600-61556200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
29 chr1:61554600-61556200 Weak transcription Fetal Stomach stomach
30 chr1:61554600-61556200 Weak transcription HSMMtube muscle
31 chr1:61554600-61556400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
32 chr1:61554600-61556800 Weak transcription Primary hematopoietic stem cells short term culture blood
33 chr1:61554600-61556800 Active TSS Skeletal Muscle Male skeletal muscle
34 chr1:61554600-61558000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr1:61554600-61558000 Weak transcription Right Ventricle heart
36 chr1:61554600-61558400 Active TSS Aorta Aorta
37 chr1:61554600-61558400 Weak transcription Lung lung
38 chr1:61554600-61558800 Enhancers Fetal Heart heart
39 chr1:61554600-61559400 Weak transcription Left Ventricle heart
40 chr1:61554600-61559400 Weak transcription Sigmoid Colon Sigmoid Colon
41 chr1:61554600-61559400 Weak transcription HMEC breast
42 chr1:61554600-61560200 Weak transcription Ovary ovary
43 chr1:61554600-61561800 Weak transcription Pancreas Pancrea
44 chr1:61554600-61563000 Weak transcription Primary monocytes fromperipheralblood blood
45 chr1:61554600-61565800 Weak transcription Gastric stomach
46 chr1:61554600-61567000 Weak transcription NHLF lung
47 chr1:61554600-61581200 Weak transcription Esophagus oesophagus
48 chr1:61554800-61556000 Weak transcription Primary hematopoietic stem cells blood
49 chr1:61554800-61557400 Active TSS Brain Inferior Temporal Lobe brain
50 chr1:61554800-61557400 Weak transcription Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015