Variant report

Variant	rs17123578
Chromosome Location	chr1:62868960-62868961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1413821	0.80[AFR][1000 genomes]
rs6587974	0.86[YRI][hapmap]
rs6587975	0.86[YRI][hapmap]
rs6687215	0.93[YRI][hapmap]
rs72929740	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929741	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929743	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72929746	0.80[AFR][1000 genomes]
rs7523145	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013582	chr1:62723703-62910632	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62848000-62871800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:62864800-62869600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:62867000-62871800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:62867200-62883600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:62867400-62872400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:62867400-62872400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:62867800-62869200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr1:62868000-62872000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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