Variant report

Variant	rs72929746
Chromosome Location	chr1:62867115-62867116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:62860264..62862036-chr1:62866095..62868741,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10789110	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10889325	0.88[ASN][1000 genomes]
rs10889326	0.88[ASN][1000 genomes]
rs10889328	0.89[ASN][1000 genomes]
rs10889329	0.82[ASN][1000 genomes]
rs1413821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473754	0.88[ASN][1000 genomes]
rs17123578	0.80[AFR][1000 genomes]
rs17123589	0.92[ASN][1000 genomes]
rs1886829	0.88[ASN][1000 genomes]
rs2065701	0.89[ASN][1000 genomes]
rs2095403	0.88[ASN][1000 genomes]
rs3861942	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4514267	0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4915615	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4915617	0.82[ASN][1000 genomes]
rs4915833	0.84[ASN][1000 genomes]
rs4915834	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4915837	0.94[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs59304510	0.88[ASN][1000 genomes]
rs59942137	0.82[ASN][1000 genomes]
rs60459828	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61492051	0.88[ASN][1000 genomes]
rs6658385	0.82[ASN][1000 genomes]
rs6681288	0.82[ASN][1000 genomes]
rs6693540	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs72929741	0.83[AFR][1000 genomes]
rs72929771	0.92[ASN][1000 genomes]
rs74079264	0.92[ASN][1000 genomes]
rs7512888	0.88[ASN][1000 genomes]
rs7543765	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013582	chr1:62723703-62910632	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62848000-62871800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:62864800-62869600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:62866400-62867200	Enhancers	H9 Cell Line	embryonic stem cell
4	chr1:62866400-62867200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:62866400-62867400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr1:62866400-62867400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:62866400-62867400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:62866400-62867400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr1:62866400-62867400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:62866400-62867600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:62866400-62867600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr1:62866400-62867800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr1:62866400-62867800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr1:62866400-62867800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr1:62866400-62867800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr1:62866400-62868000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:62866400-62868200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:62866600-62867200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:62866600-62867200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:62866600-62867200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr1:62866600-62867200	Enhancers	Brain Hippocampus Middle	brain
22	chr1:62866600-62868000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:62866800-62867200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr1:62867000-62871800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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