Variant report

Variant	rs61492051
Chromosome Location	chr1:62889825-62889826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10889328	0.85[ASN][1000 genomes]
rs10889329	0.93[ASN][1000 genomes]
rs1413821	0.88[ASN][1000 genomes]
rs17123589	0.96[ASN][1000 genomes]
rs17123603	0.81[ASN][1000 genomes]
rs2065701	0.85[ASN][1000 genomes]
rs4915617	0.93[ASN][1000 genomes]
rs59304510	1.00[ASN][1000 genomes]
rs59942137	0.93[ASN][1000 genomes]
rs60459828	0.88[ASN][1000 genomes]
rs6658385	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6681288	0.93[ASN][1000 genomes]
rs72929746	0.88[ASN][1000 genomes]
rs72929771	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74079264	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013582	chr1:62723703-62910632	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62889200-62891000	Enhancers	Fetal Intestine Large	intestine
2	chr1:62889200-62891200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr1:62889200-62891400	Enhancers	Fetal Intestine Small	intestine
4	chr1:62889400-62890800	Enhancers	K562	blood
5	chr1:62889600-62890200	Enhancers	Duodenum Mucosa	Duodenum
6	chr1:62889600-62890400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:62889600-62890400	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr1:62889600-62890600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:62889800-62890000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr1:62889800-62890400	Flanking Active TSS	HepG2	liver
11	chr1:62889800-62891200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:62889800-62891200	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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