Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:62888980..62890832-chr1:62891358..62893852,2	K562	blood:
2	chr1:62891070..62893380-chr1:62901305..62902896,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162607	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10789110	0.87[ASN][1000 genomes]
rs10889325	0.87[ASN][1000 genomes]
rs10889326	0.87[ASN][1000 genomes]
rs12038843	1.00[ASW][hapmap]
rs1473754	0.87[ASN][1000 genomes]
rs17123589	0.84[ASN][1000 genomes]
rs1886829	0.87[ASN][1000 genomes]
rs2095403	0.87[ASN][1000 genomes]
rs3861942	0.87[ASN][1000 genomes]
rs4514267	0.87[ASN][1000 genomes]
rs4915615	0.87[ASN][1000 genomes]
rs4915833	0.83[ASN][1000 genomes]
rs4915834	0.87[ASN][1000 genomes]
rs4915837	0.87[ASN][1000 genomes]
rs59304510	0.81[ASN][1000 genomes]
rs61492051	0.81[ASN][1000 genomes]
rs6693540	0.87[ASN][1000 genomes]
rs72929771	0.84[ASN][1000 genomes]
rs74079264	0.84[ASN][1000 genomes]
rs7512888	0.87[ASN][1000 genomes]
rs7543765	0.82[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013582	chr1:62723703-62910632	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62890200-62892600	Enhancers	HMEC	breast
2	chr1:62890200-62892800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:62890400-62892600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:62890600-62894800	Weak transcription	HSMMtube	muscle
5	chr1:62890600-62899400	Weak transcription	HSMM	muscle
6	chr1:62890600-62901000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:62891000-62892600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:62891000-62901000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:62891000-62901000	Weak transcription	NHEK	skin
10	chr1:62892200-62892600	Enhancers	Hela-S3	cervix
11	chr1:62892200-62894600	Weak transcription	HepG2	liver
12	chr1:62892200-62900800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:62892400-62892600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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