Variant report

Variant	rs17123589
Chromosome Location	chr1:62873074-62873075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10889328	0.82[ASN][1000 genomes]
rs10889329	0.89[ASN][1000 genomes]
rs1413821	0.92[ASN][1000 genomes]
rs17123603	0.82[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2065701	0.82[ASN][1000 genomes]
rs4915617	0.89[ASN][1000 genomes]
rs59304510	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59942137	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60459828	0.92[ASN][1000 genomes]
rs61492051	0.96[ASN][1000 genomes]
rs6658385	0.92[CHB][hapmap];0.85[CHD][hapmap];0.89[ASN][1000 genomes]
rs6681288	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72929746	0.92[ASN][1000 genomes]
rs72929771	1.00[ASN][1000 genomes]
rs74079264	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7543765	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013582	chr1:62723703-62910632	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62867200-62883600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:62872000-62873200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:62872400-62873200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:62872400-62873200	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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