Variant report

Variant	rs6658385
Chromosome Location	chr1:62887289-62887290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10889328	0.93[ASN][1000 genomes]
rs10889329	1.00[ASN][1000 genomes]
rs1413821	0.82[ASN][1000 genomes]
rs17123589	0.89[ASN][1000 genomes]
rs2065701	0.93[ASN][1000 genomes]
rs4915617	1.00[ASN][1000 genomes]
rs59304510	0.93[ASN][1000 genomes]
rs59942137	1.00[ASN][1000 genomes]
rs60459828	0.82[ASN][1000 genomes]
rs61492051	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6681288	1.00[ASN][1000 genomes]
rs72929746	0.82[ASN][1000 genomes]
rs72929771	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs74079264	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013582	chr1:62723703-62910632	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62886600-62889200	Weak transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links